RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 JAKMIP3Q5VZ66 844 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 PKNOX2Q96KN3 472 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 CEP89Q96ST8 783 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 UBA5Q9GZZ9 404 aa13.17□□□□□ -0.3
NPHP4-204ENST00000460696 C21orf2O43822 256 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 COBLO75128 1261 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 FAM193AP78312 1265 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 UBXN1Q04323 297 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 FMR1NBQ8N0W7 255 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 KIF28PB7ZC32 967 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 AKR1B15C9JRZ8 316 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 LIFRP42702 1097 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 TNNI2P48788 182 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 AMPD3Q01432 767 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 UBE4AQ14139 1066 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 PCDHB6Q9Y5E3 794 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 ADAMTSL3P82987 1691 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 FMNL1O95466 1100 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 DOK7Q18PE1 504 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 TDRD12Q587J7 1177 aaKnown RBP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 DPP8Q6V1X1 898 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 GPKOWQ92917 476 aaPredicted RBP eCLIP13.16□□□□□ -0.3
NPHP4-204ENST00000460696 CSRNP2Q9H175 543 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 C6orf50Q9HD87 102 aa13.16□□□□□ -0.3
NPHP4-204ENST00000460696 SYNRGQ9UMZ2 1314 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 FDPSP14324 419 aaKnown RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PPP2R5BQ15173 497 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 BARGINQ6ZT62 677 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 UIMC1Q96RL1 719 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 CARD6Q9BX69 1037 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PUF60Q9UHX1 559 aaKnown RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 VIRMAQ69YN4 1812 aaKnown RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PPIP5K2O43314 1243 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PPP6R2O75170 966 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PTGDRQ13258 359 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 ITPK1Q13572 414 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 BMS1Q14692 1282 aaKnown RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 SLC15A2Q16348 729 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 ZNF569Q5MCW4 686 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 EEF2KMTQ96G04 330 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 ERO1AQ96HE7 468 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 SENP2Q9HC62 589 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 TMOD2Q9NZR1 351 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 CDHR2Q9BYE9 1310 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 PEAK1Q9H792 1746 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 MMP1P03956 469 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 CSF1RP07333 972 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 GOLGA8HP0CJ92 632 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 AXDND1Q5T1B0 1012 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 TRMT1LQ7Z2T5 733 aaKnown RBP13.15□□□□□ -0.3
NPHP4-204ENST00000460696 KRT222Q8N1A0 295 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 DESI2Q9BSY9 194 aa13.15□□□□□ -0.3
NPHP4-204ENST00000460696 CDC25AP30304 524 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 CASP7P55210 303 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 ANTXR2P58335 489 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 OGFOD1Q8N543 542 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 WDR66Q8TBY9 1149 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 RRP36Q96EU6 259 aaKnown RBP13.14□□□□□ -0.31
NPHP4-204ENST00000460696 ERCC3P19447 782 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 SMYD4Q8IYR2 804 aaPredicted RBP13.14□□□□□ -0.31
NPHP4-204ENST00000460696 PNMA1Q8ND90 353 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 TAB2Q9NYJ8 693 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 DCCP43146 1447 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 PARP1P09874 1014 aaKnown RBP13.14□□□□□ -0.31
NPHP4-204ENST00000460696 SPECC1LQ69YQ0 1117 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 FERMT2Q96AC1 680 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 GUCA1BQ9UMX6 200 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 NRXN3Q9Y4C0 1643 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 OVOS2A0A0G2JMS6 1433 aa13.14□□□□□ -0.31
NPHP4-204ENST00000460696 GSG1L2A8MUP6 293 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 ARHGAP6O43182 974 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 ARID4AP29374 1257 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 CCDC40Q4G0X9 1142 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 WWC2Q6AWC2 1192 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 RASGRP4Q8TDF6 673 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 GPR101Q96P66 508 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 KCNF1Q9H3M0 494 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 LY9Q9HBG7 655 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 GPCPD1Q9NPB8 672 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 RPS6KA4O75676 772 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 HLA-DOAP06340 250 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 GNA11P29992 359 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 GPIHBP1Q8IV16 184 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 SYMPKQ92797 1274 aaKnown RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 DRC1Q96MC2 740 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 TSG101Q99816 390 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 FOXP1Q9H334 677 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 CCDC66A2RUB6 948 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 AKR1B10O60218 316 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 ERCC6LQ2NKX8 1250 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 WDHD1O75717 1129 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 EIF3JO75822 258 aaKnown RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 SCG2P13521 617 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 TXKP42681 527 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 EVCP57679 992 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 MCM6Q14566 821 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 LINC00116Q8NCU8 138 aa13.13□□□□□ -0.31
NPHP4-204ENST00000460696 RNF26Q9BY78 433 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-204ENST00000460696 MMRN2Q9H8L6 949 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms