RNA–Protein interactions for RNA: ENST00000459788.1

HDLBP-228, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-228ENST00000459788 TRMT44Q8IYL2 757 aaKnown RBP12.05□□□□□ -0.48
HDLBP-228ENST00000459788 GPRC5AQ8NFJ5 357 aa12.05□□□□□ -0.48
HDLBP-228ENST00000459788 SH3TC2Q8TF17 1288 aa12.05□□□□□ -0.48
HDLBP-228ENST00000459788 EMILIN3Q9NT22 766 aa12.05□□□□□ -0.48
HDLBP-228ENST00000459788 MBD4O95243 580 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 XRCC5P13010 732 aaKnown RBP12.04□□□□□ -0.48
HDLBP-228ENST00000459788 GNAT2P19087 354 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 GJA8P48165 433 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 C12orf60Q5U649 245 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 SOCS4Q8WXH5 440 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 GCC1Q96CN9 775 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 EDC3Q96F86 508 aaKnown RBP12.04□□□□□ -0.48
HDLBP-228ENST00000459788 P2RX7Q99572 595 aaKnown RBP12.04□□□□□ -0.48
HDLBP-228ENST00000459788 FEZ1Q99689 392 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 SH2D4AQ9H788 454 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 ARMT1Q9H993 441 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 ARPP21Q9UBL0 812 aaPredicted RBP12.04□□□□□ -0.48
HDLBP-228ENST00000459788 RABGAP1Q9Y3P9 1069 aa12.04□□□□□ -0.48
HDLBP-228ENST00000459788 ZNFX1Q9P2E3 1918 aaKnown RBP12.03□□□□□ -0.48
HDLBP-228ENST00000459788 A0A0G2JMZ2 1700 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 ZNF236Q9UL36 1845 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 GLRX3O76003 335 aaKnown RBP12.03□□□□□ -0.48
HDLBP-228ENST00000459788 CCL5P13501 91 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 EN2P19622 333 aaPredicted RBP12.03□□□□□ -0.48
HDLBP-228ENST00000459788 CCNA1P78396 465 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 RAB3GAP1Q15042 981 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 SBK1Q52WX2 424 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 CATSPERGQ6ZRH7 1159 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 SDR42E1Q8WUS8 393 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 APPBP2Q92624 585 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 LPAR1Q92633 364 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 GJD2Q9UKL4 321 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 GABRQQ9UN88 632 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 PCDHB15Q9Y5E8 787 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 MYH4Q9Y623 1939 aa12.03□□□□□ -0.48
HDLBP-228ENST00000459788 RNF113AO15541 343 aaKnown RBP12.02□□□□□ -0.49
HDLBP-228ENST00000459788 SMARCA5O60264 1052 aaPredicted RBP12.02□□□□□ -0.49
HDLBP-228ENST00000459788 HMGCRP04035 888 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 GUCY1A2P33402 732 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 ERVK-9P63128 1117 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 ERVK-24P63145 666 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 HDAC1Q13547 482 aaPredicted RBP12.02□□□□□ -0.49
HDLBP-228ENST00000459788 C16orf86Q6ZW13 317 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 STRBPQ96SI9 672 aaKnown RBP12.02□□□□□ -0.49
HDLBP-228ENST00000459788 NUDT12Q9BQG2 462 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 ZNF287Q9HBT7 754 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 HOXC10Q9NYD6 342 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 RBPJLQ9UBG7 517 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 BIN2Q9UBW5 565 aaPredicted RBP12.02□□□□□ -0.49
HDLBP-228ENST00000459788 SLC4A4Q9Y6R1 1079 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 ROBO3Q96MS0 1386 aa12.02□□□□□ -0.49
HDLBP-228ENST00000459788 VCAM1P19320 739 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 SEPT2Q15019 361 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 MTFR1Q15390 333 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 MB21D1Q8N884 522 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 PUS7LQ9H0K6 701 aaKnown RBP12.01□□□□□ -0.49
HDLBP-228ENST00000459788 RNF208Q9H0X6 261 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 ARHGEF10LQ9HCE6 1279 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 PAK6Q9NQU5 681 aaPredicted RBP12.01□□□□□ -0.49
HDLBP-228ENST00000459788 ZBTB47Q9UFB7 747 aaPredicted RBP12.01□□□□□ -0.49
HDLBP-228ENST00000459788 TMX2Q9Y320 296 aa12.01□□□□□ -0.49
HDLBP-228ENST00000459788 USP17L12C9JPN9 530 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 USP17L21D6R901 530 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 PRKAB2O43741 272 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 SGPL1O95470 568 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 INHAP05111 366 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 CDK8P49336 464 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 SHROOM1Q2M3G4 852 aaPredicted RBP12□□□□□ -0.49
HDLBP-228ENST00000459788 CTR9Q6PD62 1173 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 UBE2Q1Q7Z7E8 422 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 ANKLE1Q8NAG6 615 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 PI4K2BQ8TCG2 481 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 ACER1Q8TDN7 264 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 USP6NLQ92738 828 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 KANSL2Q9H9L4 492 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 TXNRD2Q9NNW7 524 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 SYNPO2Q9UMS6 1093 aa12□□□□□ -0.49
HDLBP-228ENST00000459788 COL11A1P12107 1806 aaPredicted RBP12□□□□□ -0.49
HDLBP-228ENST00000459788 GSG1L2A8MUP6 293 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 MPHOSPH10O00566 681 aaKnown RBP11.99□□□□□ -0.49
HDLBP-228ENST00000459788 MX1P20591 662 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 RGS2P41220 211 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 COG2Q14746 738 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 MORN1Q5T089 497 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 PLEKHH3Q7Z736 793 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 CCAR1Q8IX12 1150 aaKnown RBP11.99□□□□□ -0.49
HDLBP-228ENST00000459788 SHCBP1Q8NEM2 672 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 U2AF1L4Q8WU68 220 aaKnown RBP11.99□□□□□ -0.49
HDLBP-228ENST00000459788 SHISA4Q96DD7 197 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 HTATIP2Q9BUP3 242 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 CRISPLD2Q9H0B8 497 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 STAP2Q9UGK3 403 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 RPTORQ8N122 1335 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 SALL3Q9BXA9 1300 aa11.99□□□□□ -0.49
HDLBP-228ENST00000459788 FRMPD3Q5JV73 1810 aa11.98□□□□□ -0.49
HDLBP-228ENST00000459788 SLC15A5A6NIM6 579 aa11.98□□□□□ -0.49
HDLBP-228ENST00000459788 SPDYE16A6NNV3 312 aaPredicted RBP11.98□□□□□ -0.49
HDLBP-228ENST00000459788 WDR46O15213 610 aaKnown RBP11.98□□□□□ -0.49
HDLBP-228ENST00000459788 GPAA1O43292 621 aa11.98□□□□□ -0.49
HDLBP-228ENST00000459788 STRNO43815 780 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms