RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 USP27XA6NNY8 438 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 SNAP23O00161 211 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 POLR2DO15514 142 aaKnown RBP12.5□□□□□ -0.41
RFX3-211ENST00000458034 ZSCAN12O43309 604 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 ORC4O43929 436 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 FGRP09769 529 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 GTF2E1P29083 439 aaPredicted RBP12.5□□□□□ -0.41
RFX3-211ENST00000458034 GUCY1A2P33402 732 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 ERFEQ4G0M1 354 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 SLC10A5Q5PT55 438 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 ISM2Q6H9L7 571 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 SDR42E1Q8WUS8 393 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 RIOK1Q9BRS2 568 aaKnown RBP12.5□□□□□ -0.41
RFX3-211ENST00000458034 SERTAD1Q9UHV2 236 aa12.5□□□□□ -0.41
RFX3-211ENST00000458034 COL1A1P02452 1464 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 PHLPP2Q6ZVD8 1323 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 CDK11BP21127 795 aaKnown RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 ERCC5P28715 1186 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 GYG1P46976 350 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 PLCD1P51178 756 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 MDM2Q00987 491 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 MORC3Q14149 939 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 SPTY2D1Q68D10 685 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 CTCFLQ8NI51 663 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 PHF20Q9BVI0 1012 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 CABP5Q9NP86 173 aa12.49□□□□□ -0.41
RFX3-211ENST00000458034 ARPP21Q9UBL0 812 aaPredicted RBP12.49□□□□□ -0.41
RFX3-211ENST00000458034 TAF1P21675 1872 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 ADAMTS2O95450 1211 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 ATP1A3P13637 1013 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 SARSP49591 514 aaKnown RBP12.48□□□□□ -0.41
RFX3-211ENST00000458034 CCDC178Q5BJE1 867 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 E4F1Q66K89 784 aaPredicted RBP12.48□□□□□ -0.41
RFX3-211ENST00000458034 TMTC3Q6ZXV5 915 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 FBXO33Q7Z6M2 555 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 HOMER1Q86YM7 354 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 NUTM2AQ8IVF1 878 aaPredicted RBP12.48□□□□□ -0.41
RFX3-211ENST00000458034 ENAHQ8N8S7 591 aaPredicted RBP12.48□□□□□ -0.41
RFX3-211ENST00000458034 ZNF397Q8NF99 534 aaPredicted RBP12.48□□□□□ -0.41
RFX3-211ENST00000458034 HSD3B7Q9H2F3 369 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 ATP8A2Q9NTI2 1148 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 FANCLQ9NW38 375 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 MINPP1Q9UNW1 487 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 PCDHB6Q9Y5E3 794 aa12.48□□□□□ -0.41
RFX3-211ENST00000458034 ARHGAP6O43182 974 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 ACTN4O43707 911 aaKnown RBP12.47□□□□□ -0.41
RFX3-211ENST00000458034 KIF5BP33176 963 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 TRAPPC10P48553 1259 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 PDE4BQ07343 736 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 NR5A1Q13285 461 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 SBK1Q52WX2 424 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 RC3H1Q5TC82 1133 aaKnown RBP12.47□□□□□ -0.41
RFX3-211ENST00000458034 ADGRA1Q86SQ6 560 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 CCDC82Q8N4S0 544 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 FAM84BQ96KN1 310 aaPredicted RBP12.47□□□□□ -0.41
RFX3-211ENST00000458034 NLRP3Q96P20 1036 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 SRRTQ9BXP5 876 aaKnown RBP12.47□□□□□ -0.41
RFX3-211ENST00000458034 CSRNP2Q9H175 543 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 VPS54Q9P1Q0 977 aa12.47□□□□□ -0.41
RFX3-211ENST00000458034 IQSEC3Q9UPP2 1182 aaPredicted RBP12.47□□□□□ -0.41
RFX3-211ENST00000458034 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.47□□□□□ -0.41
RFX3-211ENST00000458034 NAV1Q8NEY1 1877 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 CNTNAP5Q8WYK1 1306 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 COL4A1P02462 1669 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 UBE2Q2LH0YL09 131 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 ATP2B1P20020 1258 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 CALML3P27482 149 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 HIBADHP31937 336 aaKnown RBP12.46□□□□□ -0.41
RFX3-211ENST00000458034 DYNLL1P63167 89 aaKnown RBP12.46□□□□□ -0.41
RFX3-211ENST00000458034 PKN1Q16512 942 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 FILIP1LQ4L180 1135 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 TTC38Q5R3I4 469 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 CTR9Q6PD62 1173 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 AMOTL1Q8IY63 956 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 LINC00116Q8NCU8 138 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 OXER1Q8TDS5 423 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 ARID3AQ99856 593 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 TMX1Q9H3N1 280 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 L2HGDHQ9H9P8 463 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 OGFRQ9NZT2 677 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 NFE2L3Q9Y4A8 694 aa12.46□□□□□ -0.41
RFX3-211ENST00000458034 SLFN14P0C7P3 912 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 ZNF18P17022 549 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 GNAQP50148 359 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 RPS8P62241 208 aaKnown RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 ETF1P62495 437 aaKnown RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 FUT2Q10981 343 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 TBX2Q13207 712 aaPredicted RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 SPECC1Q5M775 1068 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 SPECC1LQ69YQ0 1117 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 FOXP4Q8IVH2 680 aaPredicted RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 CMTR1Q8N1G2 835 aaKnown RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 SPATA20Q8TB22 786 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 DPF2Q92785 391 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 DHX58Q96C10 678 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 NSUN4Q96CB9 384 aaKnown RBP12.45□□□□□ -0.42
RFX3-211ENST00000458034 GSDMAQ96QA5 445 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 CTAGE1Q96RT6 745 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 SETDB2Q96T68 719 aa12.45□□□□□ -0.42
RFX3-211ENST00000458034 NARFQ9UHQ1 456 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms