RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 HS2ST1Q7LGA3 356 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 PODNQ7Z5L7 613 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 TICAM2Q86XR7 235 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 BLIDQ8IZY5 108 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 DYNLL2Q96FJ2 89 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 USP37Q86T82 979 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 CCDC65Q8IXS2 484 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 SMCR8Q8TEV9 937 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 GPKOWQ92917 476 aaPredicted RBP eCLIP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 TRMT1Q9NXH9 659 aaKnown RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 ZSWIM5Q9P217 1185 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 LRWD1Q9UFC0 647 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 BICDL2A1A5D9 508 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 KIF5CO60282 957 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 SF3B3Q15393 1217 aaKnown RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 NCAPH2Q6IBW4 605 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 PAF1Q8N7H5 531 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 ERCC4Q92889 916 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 PSTPIP2Q9H939 334 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 PI4KBQ9UBF8 816 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 TMEM232C9JQI7 657 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 USO1O60763 962 aaKnown RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 TTLL1O95922 423 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 AOC3Q16853 763 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 NOSTRINQ8IVI9 506 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 SP8Q8IXZ3 490 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 MTMR6Q9Y217 621 aa8.36□□□□□ -1.07
SYNE1-213ENST00000448038 COL3A1P02461 1466 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-213ENST00000448038 KIF2AO00139 706 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 HSP90AA2PQ14568 343 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 FERMT2Q96AC1 680 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 DDX39AO00148 427 aaKnown RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 ECE2O60344 883 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 GDF11O95390 407 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 ALAS1P13196 640 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 FBXO11Q86XK2 927 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 SNX29Q8TEQ0 813 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 FAM84BQ96KN1 310 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 PXDNLA1KZ92 1463 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 ZNF202O95125 648 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 CSF1RP07333 972 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 SPICE1Q8N0Z3 855 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 FNBP4Q8N3X1 1017 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 SH3RF3Q8TEJ3 882 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 KANSL2Q9H9L4 492 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 BTBD18B2RXH4 712 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 GADD45BO75293 160 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 NTSR2O95665 410 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 CHRNA5P30532 468 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 SPAG5Q96R06 1193 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 PAGR1Q9BTK6 254 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 RPAP1Q9BWH6 1393 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 COL5A2P05997 1499 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 FLOT1O75955 427 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 CRKP46108 304 aa8.35□□□□□ -1.07
SYNE1-213ENST00000448038 GPATCH4Q5T3I0 446 aaKnown RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 INTS5Q6P9B9 1019 aaKnown RBP8.35□□□□□ -1.07
SYNE1-213ENST00000448038 CD2BP2O95400 341 aaKnown RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 GRIPAP1Q4V328 841 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 GADL1Q6ZQY3 521 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 MRPL11Q9Y3B7 192 aaKnown RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 SH2B2O14492 632 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 PDE4DQ08499 809 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 SCARF1Q14162 830 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 SUPT20HL1Q3ZLR7 823 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 ASPRV1Q53RT3 343 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 IQCEQ6IPM2 695 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 FBXO18Q8NFZ0 1043 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 USP28Q96RU2 1077 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 PHACTR2O75167 634 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 CDK8P49336 464 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 CDR1P51861 262 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 PKP1Q13835 747 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 INF2Q27J81 1249 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 KIF4BQ2VIQ3 1234 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 CRAMP1Q96RY5 1269 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 CLSTN2Q9H4D0 955 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 ZNF277Q9NRM2 450 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 PUF60Q9UHX1 559 aaKnown RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 CACNB3P54284 484 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 GALNT17Q6IS24 598 aa8.34□□□□□ -1.07
SYNE1-213ENST00000448038 KDM6AO15550 1401 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-213ENST00000448038 PXDNQ92626 1479 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 PSDA5PKW4 1024 aaPredicted RBP8.34□□□□□ -1.08
SYNE1-213ENST00000448038 NOP56O00567 594 aaKnown RBP8.34□□□□□ -1.08
SYNE1-213ENST00000448038 ERLIN2O94905 339 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 CETN2P41208 172 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 TMED8Q6PL24 325 aaPredicted RBP8.34□□□□□ -1.08
SYNE1-213ENST00000448038 MIGA2Q7L4E1 593 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 LUZP1Q86V48 1076 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 NSUN7Q8NE18 718 aaKnown RBP8.34□□□□□ -1.08
SYNE1-213ENST00000448038 RNF26Q9BY78 433 aaPredicted RBP8.34□□□□□ -1.08
SYNE1-213ENST00000448038 PCDHA1Q9Y5I3 950 aa8.34□□□□□ -1.08
SYNE1-213ENST00000448038 AKR1B10O60218 316 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 KCTD1Q719H9 257 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 CABP7Q86V35 215 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 KIF18AQ8NI77 898 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 LMBRD1Q9NUN5 540 aa8.33□□□□□ -1.08
SYNE1-213ENST00000448038 USP42Q9H9J4 1324 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms