RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 FPGT-TNNI3KV9GXZ4 949 aa9.78□□□□□ -0.84
HPS4-206ENST00000439453 E7EWF7 191 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 BBOX1O75936 387 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 SYNE3Q6ZMZ3 975 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 TOGARAM2Q6ZUX3 1019 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 DDX46Q7L014 1031 aaKnown RBP9.77□□□□□ -0.84
HPS4-206ENST00000439453 CHST3Q7LGC8 479 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 VPS18Q9P253 973 aa9.77□□□□□ -0.84
HPS4-206ENST00000439453 ANO1Q5XXA6 986 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 BRAPQ7Z569 592 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 GOLGA6L1Q8N7Z2 621 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 HAUS7Q99871 368 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 PDE11AQ9HCR9 933 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 MROH7-TTC4A0A0A0MT08 1334 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 MYO1BO43795 1136 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 ITGA6P23229 1130 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 GPSM2P81274 684 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 TFCP2Q12800 502 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 TBX2Q13207 712 aaPredicted RBP9.77□□□□□ -0.85
HPS4-206ENST00000439453 PDILTQ8N807 584 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 INTS13Q9NVM9 706 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 FANCLQ9NW38 375 aa9.77□□□□□ -0.85
HPS4-206ENST00000439453 STX10O60499 249 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 SYKP43405 635 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 NOM1Q5C9Z4 860 aaKnown RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 C9orf131Q5VYM1 1079 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 LMBR1LQ6UX01 489 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 DSCC1Q9BVC3 393 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 WDHD1O75717 1129 aaPredicted RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 RPS8P62241 208 aaKnown RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 HDXQ7Z353 690 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 CCDC12Q8WUD4 166 aaPredicted RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 HNRNPLLQ8WVV9 542 aaKnown RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 ZBTB9Q96C00 473 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 ZSWIM4Q9H7M6 989 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 POLLQ9UGP5 575 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 CHMP4BP1P59074 171 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 PNOCQ13519 176 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 MCM6Q14566 821 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 KARSQ15046 597 aaKnown RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 BEND6Q5SZJ8 279 aaPredicted RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 KBTBD3Q8NAB2 608 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 DBNDD2Q9BQY9 259 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 TAOK3Q9H2K8 898 aa9.76□□□□□ -0.85
HPS4-206ENST00000439453 ZNF277Q9NRM2 450 aaPredicted RBP9.76□□□□□ -0.85
HPS4-206ENST00000439453 A0A1B0GUL7 405 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 LMNB1P20700 586 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 MARCKSP29966 332 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 SOGA3Q5TF21 947 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 SRGAP1Q7Z6B7 1085 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 TC2NQ8N9U0 490 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 ZNF594Q96JF6 807 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 YY1AP1Q9H869 796 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 COPRSQ9NQ92 184 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 KIF28PB7ZC32 967 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 RPS6KA5O75582 802 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 GTF2A1P52655 376 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 TAF7LQ5H9L4 462 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 ICE2Q659A1 982 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 RTKN2Q8IZC4 609 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 HELLSQ9NRZ9 838 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 BSDC1Q9NW68 430 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 MINPP1Q9UNW1 487 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 CUTAO60888 179 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 ADKP55263 362 aaKnown RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 SLC39A14Q15043 492 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 TMC4Q7Z404 712 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 DESI2Q9BSY9 194 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 ANKZF1Q9H8Y5 726 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 GJB4Q9NTQ9 266 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 POTEB2H3BUK9 544 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 EIF3JO75822 258 aaKnown RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 MAGEA9P43362 315 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 USP5P45974 858 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 FOXR1Q6PIV2 292 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 GPR101Q96P66 508 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 GPHNQ9NQX3 736 aaPredicted RBP9.75□□□□□ -0.85
HPS4-206ENST00000439453 RNF181Q9P0P0 153 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 HPSEQ9Y251 543 aa9.75□□□□□ -0.85
HPS4-206ENST00000439453 KIF23Q02241 960 aaPredicted RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 TTC31Q49AM3 519 aaPredicted RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 CC2D2BQ6DHV5 1058 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 MSL3Q8N5Y2 521 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 MRPL44Q9H9J2 332 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 RAB21Q9UL25 225 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 FAN1Q9Y2M0 1017 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 ZNF541Q9H0D2 1346 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 N4BP1O75113 896 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 HSPD1P10809 573 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 YY1P25490 414 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 VGLL2Q8N8G2 317 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 PUS3Q9BZE2 481 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 PUF60Q9UHX1 559 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 ECM29Q5VYK3 1845 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 ERLIN1O75477 346 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 IARSP41252 1262 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 PTPN12Q05209 780 aaKnown RBP9.74□□□□□ -0.85
HPS4-206ENST00000439453 HSP90AA4PQ58FG1 418 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 SPECC1LQ69YQ0 1117 aa9.74□□□□□ -0.85
HPS4-206ENST00000439453 ANKRD18AQ8IVF6 992 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms