RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ZNF18P17022 549 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 NFIXQ14938 502 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 REXO1L1PQ8IX06 675 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 CCDC82Q8N4S0 544 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 PRR29P0C7W0 189 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 MORC3Q14149 939 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 ADGRA1Q86SQ6 560 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 FCHSD1Q86WN1 690 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 ZNF654Q8IZM8 581 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 SPATA20Q8TB22 786 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 OXER1Q8TDS5 423 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 SERTAD1Q9UHV2 236 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 PHLPP2Q6ZVD8 1323 aa16.35■□□□□ 0.21
LIG1-202ENST00000427526 ERICH2A1L162 156 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 FMR1Q06787 632 aaKnown RBP eCLIP16.34■□□□□ 0.217e-8■■□□□ 12.6
LIG1-202ENST00000427526 SEC23AQ15436 765 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 CAVIN4Q5BKX8 364 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 MLKLQ8NB16 471 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 LRRN4CLQ8ND94 238 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 RNF41Q9H4P4 317 aaPredicted RBP16.34■□□□□ 0.21
LIG1-202ENST00000427526 TOMM22Q9NS69 142 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.34■□□□□ 0.21
LIG1-202ENST00000427526 PPARAQ07869 468 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 PTPN21Q16825 1174 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 ENOX1Q8TC92 643 aaKnown RBP16.34■□□□□ 0.21
LIG1-202ENST00000427526 SHISA4Q96DD7 197 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 MED15Q96RN5 788 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 GNL3LQ9NVN8 582 aaKnown RBP16.34■□□□□ 0.21
LIG1-202ENST00000427526 TFCP2L1Q9NZI6 479 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 RAI14Q9P0K7 980 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 ANAPC4Q9UJX5 808 aa16.34■□□□□ 0.21
LIG1-202ENST00000427526 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.34■□□□□ 0.214e-7■■□□□ 14.5
LIG1-202ENST00000427526 FANCGO15287 622 aa16.33■□□□□ 0.21
LIG1-202ENST00000427526 ACTN4O43707 911 aaKnown RBP16.33■□□□□ 0.21
LIG1-202ENST00000427526 CYP7A1P22680 504 aa16.33■□□□□ 0.21
LIG1-202ENST00000427526 GOLGA8FQ08AF8 430 aa16.33■□□□□ 0.21
LIG1-202ENST00000427526 GOLGA8DPQ0D2H9 430 aa16.33■□□□□ 0.21
LIG1-202ENST00000427526 ERCC6LQ2NKX8 1250 aa16.33■□□□□ 0.2
LIG1-202ENST00000427526 HOMER1Q86YM7 354 aa16.33■□□□□ 0.2
LIG1-202ENST00000427526 TRIML1Q8N9V2 468 aa16.33■□□□□ 0.2
LIG1-202ENST00000427526 COL1A1P02452 1464 aaPredicted RBP16.33■□□□□ 0.2
LIG1-202ENST00000427526 TRIM37O94972 964 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 H2AFXP16104 143 aaPredicted RBP16.32■□□□□ 0.2
LIG1-202ENST00000427526 NOL10Q9BSC4 688 aaKnown RBP16.32■□□□□ 0.2
LIG1-202ENST00000427526 TMEM51Q9NW97 253 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 NFE2L3Q9Y4A8 694 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 PPP2R5BQ15173 497 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 USP49Q70CQ1 688 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 SMARCE1Q969G3 411 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 RNF26Q9BY78 433 aaPredicted RBP16.32■□□□□ 0.2
LIG1-202ENST00000427526 DNAI1Q9UI46 699 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 CEP131Q9UPN4 1083 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 ARHGAP6O43182 974 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 KANK3Q6NY19 840 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 FBXO33Q7Z6M2 555 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 GRAMD1CQ8IYS0 662 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 NUP133Q8WUM0 1156 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 CSRNP2Q9H175 543 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 CABP5Q9NP86 173 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 ZNF446Q9NWS9 450 aa16.32■□□□□ 0.2
LIG1-202ENST00000427526 PKN1Q16512 942 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 UBAC1Q9BSL1 405 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 DACH1Q9UI36 760 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 SBF2Q86WG5 1849 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 LY75O60449 1722 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 TNKSO95271 1327 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 FUT2Q10981 343 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 HSP90AA4PQ58FG1 418 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 TXNRD3Q86VQ6 643 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 TC2NQ8N9U0 490 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 SDR42E1Q8WUS8 393 aa16.31■□□□□ 0.2
LIG1-202ENST00000427526 VWA3AA6NCI4 1184 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 SMIM22K7EJ46 135 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 ZNF827Q17R98 1081 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 ESR2Q92731 530 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 TAF1LQ8IZX4 1826 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 ZSCAN12O43309 604 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 SPECC1LQ69YQ0 1117 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 KRT27Q7Z3Y8 459 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 CNBD1Q8NA66 436 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 ZNF384Q8TF68 577 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 PPP2R2CQ9Y2T4 447 aa16.3■□□□□ 0.2
LIG1-202ENST00000427526 STX10O60499 249 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 GABPB1Q06547 395 aaPredicted RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 KRT222Q8N1A0 295 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 PDILTQ8N807 584 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 BAG1Q99933 345 aaPredicted RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 RIOK1Q9BRS2 568 aaKnown RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 PHF20Q9BVI0 1012 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 AATFQ9NY61 560 aaKnown RBP eCLIP16.29■□□□□ 0.2
LIG1-202ENST00000427526 JAG2Q9Y219 1238 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 MINDY4BA8MYZ0 360 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 ERCC5P28715 1186 aaPredicted RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 NR1I3Q14994 352 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 TRMT44Q8IYL2 757 aaKnown RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 ENAHQ8N8S7 591 aaPredicted RBP16.29■□□□□ 0.2
LIG1-202ENST00000427526 ANKRD2Q9GZV1 360 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 COL24A1Q17RW2 1714 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 A0A087X0B3 334 aa16.29■□□□□ 0.2
LIG1-202ENST00000427526 MAGEB6P1A0A0J9YX57 407 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms