RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 CDK8P49336 464 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 MMP14P50281 582 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 GUCY1B3Q02153 619 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 KIF23Q02241 960 aaPredicted RBP10.93□□□□□ -0.66
HMGB4-201ENST00000425537 STK38Q15208 465 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 MYSM1Q5VVJ2 828 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 CCDC73Q6ZRK6 1079 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 NEDD1Q8NHV4 660 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 PHKBQ93100 1093 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 CHAMP1Q96JM3 812 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 FOXP1Q9H334 677 aaPredicted RBP10.93□□□□□ -0.66
HMGB4-201ENST00000425537 TSPY26PQ9H489 355 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 DBNDD1Q9H9R9 158 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 SENP2Q9HC62 589 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 SAP30BPQ9UHR5 308 aaKnown RBP10.93□□□□□ -0.66
HMGB4-201ENST00000425537 SERPINA10Q9UK55 444 aa10.93□□□□□ -0.66
HMGB4-201ENST00000425537 MYH6P13533 1939 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 F8W031 263 aaPredicted RBP10.92□□□□□ -0.66
HMGB4-201ENST00000425537 CTAGE5O15320 804 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 MMP1P03956 469 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 YY1P25490 414 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 U2AF2P26368 475 aaKnown RBP eCLIP10.92□□□□□ -0.66
HMGB4-201ENST00000425537 CRKP46108 304 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 TROAPQ12815 778 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 FAM47AQ5JRC9 791 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 DACT2Q5SW24 774 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 TMTC3Q6ZXV5 915 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 CERS5Q8N5B7 392 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 PNMA1Q8ND90 353 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 CCDC17Q96LX7 622 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 TMOD2Q9NZR1 351 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 HDAC9Q9UKV0 1011 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 CEP131Q9UPN4 1083 aa10.92□□□□□ -0.66
HMGB4-201ENST00000425537 ECM29Q5VYK3 1845 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 ZNF541Q9H0D2 1346 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 A0A1W2PQ27 194 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 A0A1W2PQ64 194 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 A0A1W2PQD8 194 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 SYCE3A1L190 88 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 DTNBO60941 627 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 BMP15O95972 392 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 TOP1P11387 765 aaKnown RBP10.91□□□□□ -0.66
HMGB4-201ENST00000425537 LMNB1P20700 586 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 RASA1P20936 1047 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 CALML3P27482 149 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 ME1P48163 572 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 NASPP49321 788 aaPredicted RBP10.91□□□□□ -0.66
HMGB4-201ENST00000425537 RBM5P52756 815 aaKnown RBP eCLIP10.91□□□□□ -0.66
HMGB4-201ENST00000425537 RILPL1Q5EBL4 403 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 FAM173BQ6P4H8 233 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 NBPF11Q86T75 865 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 LARGE2Q8N3Y3 721 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 DYNLL2Q96FJ2 89 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 USP28Q96RU2 1077 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 TRIM34Q9BYJ4 488 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 NUP62CLQ9H1M0 184 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 EHD4Q9H223 541 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 SH3GLB2Q9NR46 395 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 SERPINB13Q9UIV8 391 aa10.91□□□□□ -0.66
HMGB4-201ENST00000425537 NOL7Q9UMY1 257 aaKnown RBP10.91□□□□□ -0.66
HMGB4-201ENST00000425537 PLIN4Q96Q06 1357 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 DICER1Q9UPY3 1922 aaKnown RBP10.9□□□□□ -0.66
HMGB4-201ENST00000425537 SPTLC2O15270 562 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 CAVIN2O95810 425 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 SMARCA1P28370 1054 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 SCNN1DP51172 638 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 PLCD1P51178 756 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 PICALMQ13492 652 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 GRM4Q14833 912 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 MAP3K11Q16584 847 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 ANO1Q5XXA6 986 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 ADALQ6DHV7 355 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 CDC42EP5Q6NZY7 148 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 NOSTRINQ8IVI9 506 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 OGFOD1Q8N543 542 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 NKX2-3Q8TAU0 364 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 CCDC12Q8WUD4 166 aaPredicted RBP10.9□□□□□ -0.66
HMGB4-201ENST00000425537 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.9□□□□□ -0.66
HMGB4-201ENST00000425537 IDI2Q9BXS1 227 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 OSBPL5Q9H0X9 879 aaPredicted RBP10.9□□□□□ -0.66
HMGB4-201ENST00000425537 KCNQ5Q9NR82 932 aa10.9□□□□□ -0.66
HMGB4-201ENST00000425537 PSME4Q14997 1843 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 COL2A1P02458 1487 aaPredicted RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 KINO60870 393 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 PPFIA3O75145 1194 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 PPP6R2O75170 966 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 ENTPD3O75355 529 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 WDHD1O75717 1129 aaPredicted RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 CCDC192P0DO97 292 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 XRCC6P12956 609 aaKnown RBP eCLIP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 KRT2P35908 639 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 CEBPZQ03701 1054 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 SLC39A14Q15043 492 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 UVSSAQ2YD98 709 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 OTUD7BQ6GQQ9 843 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 GALNT17Q6IS24 598 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 RCSD1Q6JBY9 416 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 APOBEC3HQ6NTF7 200 aaKnown RBP10.89□□□□□ -0.67
HMGB4-201ENST00000425537 KIAA0825Q8IV33 1275 aa10.89□□□□□ -0.67
HMGB4-201ENST00000425537 FOXP4Q8IVH2 680 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms