RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KRT12Q99456 494 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 RAB17Q9H0T7 212 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 KIF9Q9HAQ2 790 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 ORC6Q9Y5N6 252 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 CD19P15391 556 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 KRT33BQ14525 404 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 USH1GQ495M9 461 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 HSP90AA4PQ58FG1 418 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 DENND2CQ68D51 928 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 KRT25Q7Z3Z0 450 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 METTL23Q86XA0 190 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 GRK7Q8WTQ7 553 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 WDR17Q8IZU2 1322 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 NUCB1Q02818 461 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 TBC1D8BQ0IIM8 1120 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 AP5M1Q9H0R1 490 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 DDX39AO00148 427 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 PDE8AO60658 829 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 OSBPP22059 807 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 GARSP41250 739 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 JARID2Q92833 1246 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 DACT3Q96B18 629 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 LRRC2Q9BYS8 371 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 EIF3CLB5ME19 914 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 NONOQ15233 471 aaKnown RBP eCLIP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 ZSCAN23Q3MJ62 389 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 EFCAB13Q8IY85 973 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 SLFN12Q8IYM2 578 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 CPXCR1Q8N123 301 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 LINS1Q8NG48 757 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 EIF3CQ99613 913 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 GDPD2Q9HCC8 539 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 CPSF3Q9UKF6 684 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 KDM5AP29375 1690 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 MROH5Q6ZUA9 1318 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 PPIP5K2O43314 1243 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 GAS7O60861 476 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 PPFIA4O75335 1185 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 MTMR3Q13615 1198 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 RUFY3Q7L099 469 aa7.57□□□□□ -1.2
SCN1A-204ENST00000423058 RAB44Q7Z6P3 723 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 CCDC124Q96CT7 223 aaKnown RBP7.57□□□□□ -1.2
SCN1A-204ENST00000423058 EIF3DO15371 548 aaKnown RBP eCLIP7.56□□□□□ -1.23e-6■■□□□ 11.9
SCN1A-204ENST00000423058 TLR3O15455 904 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SETSIPP0DME0 302 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 ESYT1Q9BSJ8 1104 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 IFT122Q9HBG6 1241 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 ZRANB1Q9UGI0 708 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SBNO2Q9Y2G9 1366 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 STK25O00506 426 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 EXOC3O60645 756 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 PCK1P35558 622 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 CEBPAP49715 358 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 ZYXQ15942 572 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 C8orf74Q6P047 294 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 MICALL1Q8N3F8 863 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 NECAB1Q8N987 351 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 RNF169Q8NCN4 708 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 CHMP6Q96FZ7 201 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 HESX1Q9UBX0 185 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 USTQ9Y2C2 406 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 FLT4P35916 1363 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 PYGLP06737 847 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 IDI1Q13907 227 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 KIAA1841Q6NSI8 718 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 TMX3Q96JJ7 454 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 MMS19Q96T76 1030 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 BAG1Q99933 345 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 RFC1P35251 1148 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 KLHL40Q2TBA0 621 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 LLPHQ9BRT6 129 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 BTG4Q9NY30 223 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 PCDHB13Q9Y5F0 798 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 ZFYVE9O95405 1425 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SPDYE2BA6NHP3 402 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SPDYE6P0CI01 402 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 COG7P83436 770 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 JPH2Q9BR39 696 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 TYW1Q9NV66 732 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 CPSF2Q9P2I0 782 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SYNRGQ9UMZ2 1314 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 URB2Q14146 1524 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 LIG4P49917 911 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 ATP8B2P98198 1209 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 MAEAQ7L5Y9 396 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 SMC5Q8IY18 1101 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 Q9H521 79 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 LZTFL1Q9NQ48 299 aa7.56□□□□□ -1.2
SCN1A-204ENST00000423058 TTF2Q9UNY4 1162 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 MRPL11Q9Y3B7 192 aaKnown RBP7.56□□□□□ -1.2
SCN1A-204ENST00000423058 PSDA5PKW4 1024 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 DNAJC8O75937 253 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 SDSP20132 328 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 PPARGP37231 505 aaPredicted RBP7.55□□□□□ -1.2
SCN1A-204ENST00000423058 TFDP1Q14186 410 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 DBN1Q16643 649 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ODR4Q5SWX8 454 aa7.55□□□□□ -1.2
SCN1A-204ENST00000423058 ZC3H15Q8WU90 426 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms