RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 USP25Q9UHP3 1055 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 CD2APQ9Y5K6 639 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 C4AP0C0L4 1744 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 MYH7P12883 1935 aa9.64□□□□□ -0.87
USP54-203ENST00000418501 PPP6R2O75170 966 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 ATP2B2Q01814 1243 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 FAM160A1Q05DH4 1040 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 CCDC96Q2M329 555 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 ADALQ6DHV7 355 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 OLFM4Q6UX06 510 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 DIS3L2Q8IYB7 885 aaKnown RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 RAB34Q9BZG1 259 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 KANSL2Q9H9L4 492 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 ZNRF3Q9ULT6 936 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 SYCE3A1L190 88 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 C21orf2O43822 256 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 TTLL1O95922 423 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 SCG2P13521 617 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 GRM4Q14833 912 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 RAB11FIP4Q86YS3 637 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 GPR101Q96P66 508 aaPredicted RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 V9GY48 417 aaPredicted RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 SMC2O95347 1197 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 KIF23Q02241 960 aaPredicted RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 FAM47AQ5JRC9 791 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 CIAPIN1Q6FI81 312 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 ADGRA1Q86SQ6 560 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 KIAA0825Q8IV33 1275 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 TEX2Q8IWB9 1127 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 GDPD2Q9HCC8 539 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 HPS5Q9UPZ3 1129 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 MMP1P03956 469 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 IKQ13123 557 aaPredicted RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 KRT25Q7Z3Z0 450 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 CEP57L1Q8IYX8 460 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 KRI1Q8N9T8 703 aaKnown RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 FERMT2Q96AC1 680 aa9.63□□□□□ -0.87
USP54-203ENST00000418501 OSBPL5Q9H0X9 879 aaPredicted RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 HERC5Q9UII4 1024 aaKnown RBP9.63□□□□□ -0.87
USP54-203ENST00000418501 CHRNA5P30532 468 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 PKNOX2Q96KN3 472 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 GINM1Q9NU53 330 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 RXRAP19793 462 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 ORC2Q13416 577 aaPredicted RBP9.62□□□□□ -0.87
USP54-203ENST00000418501 SEC23AQ15436 765 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 RSBN1LQ6PCB5 846 aaPredicted RBP9.62□□□□□ -0.87
USP54-203ENST00000418501 PHKBQ93100 1093 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 CLSTN2Q9H4D0 955 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 SYNPO2Q9UMS6 1093 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 BRWD3Q6RI45 1802 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 SMTNL1A8MU46 457 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 FOXP2O15409 715 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 SCNN1DP51172 638 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 AOC3Q16853 763 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 CERKLQ49MI3 558 aaPredicted RBP9.62□□□□□ -0.87
USP54-203ENST00000418501 CCDC82Q8N4S0 544 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 MAST2Q6P0Q8 1798 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 IRS2Q9Y4H2 1338 aa9.62□□□□□ -0.87
USP54-203ENST00000418501 STX1AQ16623 288 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 PPP1R18Q6NYC8 613 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 TMEM179Q6ZVK1 233 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 MYL10Q9BUA6 226 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CCDC39Q9UFE4 941 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 RAD21O60216 631 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 NAPAP54920 295 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 SLC39A14Q15043 492 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CFAP100Q494V2 611 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CUL5Q93034 780 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CTDNEP1O95476 244 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 DPEP1P16444 411 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 MRPL12P52815 198 aaKnown RBP9.61□□□□□ -0.87
USP54-203ENST00000418501 FKBP1CQ5VVH2 108 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP54-203ENST00000418501 IDI2Q9BXS1 227 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 STK24Q9Y6E0 443 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CYP2D7A0A087X1C5 515 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 LAD1O00515 517 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 MSNP26038 577 aaKnown RBP9.61□□□□□ -0.87
USP54-203ENST00000418501 DCAF4Q8WV16 495 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 SPZ1Q9BXG8 430 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 NBPF3Q9H094 633 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 GOPCQ9HD26 462 aa9.61□□□□□ -0.87
USP54-203ENST00000418501 CMA1P23946 247 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 SYKP43405 635 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 TMEM266Q2M3C6 531 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 HEATR3Q7Z4Q2 680 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 TIGD1Q96MW7 591 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 LRRC27Q9C0I9 530 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 DACT1Q9NYF0 836 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 MTMR7Q9Y216 660 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 AKAP11Q9UKA4 1901 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 TIAM2Q8IVF5 1701 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 COL1A1P02452 1464 aaPredicted RBP9.6□□□□□ -0.87
USP54-203ENST00000418501 KLRF2D3W0D1 207 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 CYP2D6P10635 497 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 U2AF2P26368 475 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP54-203ENST00000418501 PFKFB3Q16875 520 aaPredicted RBP9.6□□□□□ -0.87
USP54-203ENST00000418501 DACT2Q5SW24 774 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 DCAF15Q66K64 600 aa9.6□□□□□ -0.87
USP54-203ENST00000418501 CDC42EP5Q6NZY7 148 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms