RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 FAM43AQ8N2R8 423 aa27.41■■□□□ 1.98
SMARCB1-205ENST00000417137 FEZ1Q99689 392 aa27.41■■□□□ 1.98
SMARCB1-205ENST00000417137 IL25Q9H293 177 aa27.41■■□□□ 1.98
SMARCB1-205ENST00000417137 PRDM1O75626 825 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 PCP11498 1178 aaKnown RBP27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 HMGCS2P54868 508 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 MOGSQ13724 837 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 IMMTQ16891 758 aaKnown RBP27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 USP17L2Q6R6M4 530 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 ZFYVE28Q9HCC9 887 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 ARHGEF10LQ9HCE6 1279 aa27.4■■□□□ 1.98
SMARCB1-205ENST00000417137 PDHXO00330 501 aa27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 TBC1D8O95759 1140 aa27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 PABPC4Q13310 644 aaKnown RBP eCLIP27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 TAF1CQ15572 869 aaPredicted RBP27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 ESYT1Q9BSJ8 1104 aa27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 RNF41Q9H4P4 317 aaPredicted RBP27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 TSKSQ9UJT2 592 aa27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 SLC45A1Q9Y2W3 748 aa27.39■■□□□ 1.98
SMARCB1-205ENST00000417137 TSPY3P0CV98 308 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 TSPY8P0CW00 308 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 HAND2P61296 217 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 ICA1Q05084 483 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 GPAT2Q6NUI2 795 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 KIAA1683Q9H0B3 1180 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 SH2D4AQ9H788 454 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 AGTPBP1Q9UPW5 1226 aa27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.38■■□□□ 1.97
SMARCB1-205ENST00000417137 ORC4O43929 436 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 FGRP09769 529 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 AKNAD1Q5T1N1 836 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 MFSD6Q6ZSS7 791 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 TOMM22Q9NS69 142 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 U3KPZ7 1027 aaPredicted RBP27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 ATAD5Q96QE3 1844 aa27.37■■□□□ 1.97
SMARCB1-205ENST00000417137 LAMB1P07942 1786 aa27.36■■□□□ 1.97
SMARCB1-205ENST00000417137 TFAP4Q01664 338 aa27.36■■□□□ 1.97
SMARCB1-205ENST00000417137 PPP4R3BQ5MIZ7 849 aa27.36■■□□□ 1.97
SMARCB1-205ENST00000417137 NEDD1Q8NHV4 660 aa27.36■■□□□ 1.97
SMARCB1-205ENST00000417137 ACER1Q8TDN7 264 aa27.36■■□□□ 1.97
SMARCB1-205ENST00000417137 TSPY2A6NKD2 308 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 RANBP6O60518 1105 aaKnown RBP27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 NT5C2P49902 561 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 PTH1RQ03431 593 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 CRHR2Q13324 411 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 NOM1Q5C9Z4 860 aaKnown RBP27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 STAG1Q8WVM7 1258 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 PARK7Q99497 189 aaKnown RBP27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 PNMA3Q9UL41 463 aa27.35■■□□□ 1.97
SMARCB1-205ENST00000417137 ATP2B2Q01814 1243 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 FAM47AQ5JRC9 791 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 MAP4K1Q92918 833 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 ABHD8Q96I13 439 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 C12orf42Q96LP6 360 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 INCENPQ9NQS7 918 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 EMILIN3Q9NT22 766 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 PHIPQ8WWQ0 1821 aa27.34■■□□□ 1.97
SMARCB1-205ENST00000417137 EEF2P13639 858 aaKnown RBP27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 OSBPP22059 807 aa27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 ZYXQ15942 572 aaKnown RBP27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 RRP12Q5JTH9 1297 aaKnown RBP27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 NYAP2Q9P242 653 aa27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 TMX2Q9Y320 296 aa27.33■■□□□ 1.97
SMARCB1-205ENST00000417137 A0A1W2PRG0 241 aa27.32■■□□□ 1.96
SMARCB1-205ENST00000417137 GPR25O00155 361 aa27.32■■□□□ 1.96
SMARCB1-205ENST00000417137 TREML2Q5T2D2 321 aa27.32■■□□□ 1.96
SMARCB1-205ENST00000417137 SIAH1Q8IUQ4 282 aa27.32■■□□□ 1.96
SMARCB1-205ENST00000417137 IGKV6D-41A0A0C4DH26 115 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 TLR2O60603 784 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 HOXA7P31268 230 aaPredicted RBP27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 TBC1D10CQ8IV04 446 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 ESR2Q92731 530 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 NBPF3Q9H094 633 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 R3HDMLQ9H3Y0 253 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 ANO2Q9NQ90 1003 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 MTMR4Q9NYA4 1195 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 TACC3Q9Y6A5 838 aa27.31■■□□□ 1.96
SMARCB1-205ENST00000417137 TTLL1O95922 423 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 DGKZQ13574 1117 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 CLEC10AQ8IUN9 316 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 LPAR1Q92633 364 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 CEP95Q96GE4 821 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 CNNM2Q9H8M5 875 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 GOPCQ9HD26 462 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 CLIP2Q9UDT6 1046 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 PLIN4Q96Q06 1357 aa27.3■■□□□ 1.96
SMARCB1-205ENST00000417137 IRX3P78415 501 aaPredicted RBP27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 SMCR8Q8TEV9 937 aaPredicted RBP27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 KRT23Q9C075 422 aa27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 LSG1Q9H089 658 aaKnown RBP27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 SYNPO2Q9UMS6 1093 aa27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 MYH8P13535 1937 aa27.29■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L15C9J2P7 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L13C9JLJ4 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L11C9JVI0 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L18D6R9N7 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L22D6RA61 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L17D6RBQ6 530 aa27.28■■□□□ 1.96
SMARCB1-205ENST00000417137 USP17L19D6RCP7 530 aa27.28■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms