RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 NT5C2P49902 561 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 EVX2Q03828 476 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 PDE4BQ07343 736 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 ME3Q16798 604 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 SLC4A8Q2Y0W8 1093 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 SPDYE2Q495Y8 402 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 NKX2-3Q8TAU0 364 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 ESR2Q92731 530 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 INTS4Q96HW7 963 aaKnown RBP13.25□□□□□ -0.29
LINC00539-201ENST00000411525 CLMNQ96JQ2 1002 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 TMEM87BQ96K49 555 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 OSBPL5Q9H0X9 879 aaPredicted RBP13.25□□□□□ -0.29
LINC00539-201ENST00000411525 INCENPQ9NQS7 918 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 FOXD4L1Q9NU39 408 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.25□□□□□ -0.29
LINC00539-201ENST00000411525 FZD1Q9UP38 647 aa13.25□□□□□ -0.29
LINC00539-201ENST00000411525 COL2A1P02458 1487 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-201ENST00000411525 OTOFQ9HC10 1997 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 SH2B2O14492 632 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-201ENST00000411525 ORC4O43929 436 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 MTA3Q9BTC8 594 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 IDI2Q9BXS1 227 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 R3HDMLQ9H3Y0 253 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 DDX4Q9NQI0 724 aaKnown RBP13.24□□□□□ -0.29
LINC00539-201ENST00000411525 ZNF70Q9UC06 446 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-201ENST00000411525 TRIM17Q9Y577 477 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 CENPFP49454 3210 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 HTTP42858 3142 aa13.24□□□□□ -0.29
LINC00539-201ENST00000411525 SIPA1L1O43166 1804 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 TESPA1A2RU30 521 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 IGF2BP3O00425 579 aaKnown RBP eCLIP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 NPM3O75607 178 aaKnown RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 DDIT3P35638 169 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 PLCD1P51178 756 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 APOBRQ0VD83 1088 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 ST3GAL1Q11201 340 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 NFIAQ12857 509 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 SART3Q15020 963 aaKnown RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 ARHGEF6Q15052 776 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 C16orf86Q6ZW13 317 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 CCDC83Q8IWF9 413 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 TDRD3Q9H7E2 651 aaKnown RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 GPHNQ9NQX3 736 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 TMOD2Q9NZR1 351 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 ZSWIM5Q9P217 1185 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 CIZ1Q9ULV3 898 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-201ENST00000411525 MYH8P13535 1937 aa13.23□□□□□ -0.29
LINC00539-201ENST00000411525 RBBP6Q7Z6E9 1792 aaKnown RBP13.22□□□□□ -0.29
LINC00539-201ENST00000411525 IFIT3O14879 490 aaKnown RBP13.22□□□□□ -0.29
LINC00539-201ENST00000411525 PRDM1O75626 825 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 HLA-DOAP06340 250 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 CACNB3P54284 484 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 EVCP57679 992 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 TMEM67Q5HYA8 995 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 OTOP1Q7RTM1 612 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 TTC6Q86TZ1 520 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 NECAB1Q8N987 351 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 GTF3C6Q969F1 213 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 HOOK2Q96ED9 719 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 DYNLL2Q96FJ2 89 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 UBAC1Q9BSL1 405 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 ZNF287Q9HBT7 754 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 CWC22Q9HCG8 908 aaKnown RBP13.22□□□□□ -0.29
LINC00539-201ENST00000411525 FAM198AQ9UFP1 575 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.22□□□□□ -0.29
LINC00539-201ENST00000411525 CSADQ9Y600 493 aa13.22□□□□□ -0.29
LINC00539-201ENST00000411525 KLF18A0A0U1RQI7 1052 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 ERICH2A1L162 156 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 RANBP6O60518 1105 aaKnown RBP13.21□□□□□ -0.29
LINC00539-201ENST00000411525 PFKFB2O60825 505 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 ENTPD3O75355 529 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 LIFRP42702 1097 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 GTF2A2P52657 109 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 SP3Q02447 781 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 STK3Q13188 491 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 CRHR2Q13324 411 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 SGMS1Q86VZ5 419 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 IQCA1Q86XH1 822 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 SLC44A5Q8NCS7 719 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 IGDCC4Q8TDY8 1250 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 OPTNQ96CV9 577 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 ZNF274Q96GC6 653 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-201ENST00000411525 ELP3Q9H9T3 547 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 LY9Q9HBG7 655 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 CHMP5Q9NZZ3 219 aa13.21□□□□□ -0.29
LINC00539-201ENST00000411525 NAP1L2Q9ULW6 460 aaPredicted RBP13.21□□□□□ -0.29
LINC00539-201ENST00000411525 ATRNL1Q5VV63 1379 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 TNKSO95271 1327 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 TSPY2A6NKD2 308 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 GOLGA8BA8MQT2 603 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 TCP10L2B9ZVM9 353 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 GJA5P36382 358 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 MAP3K9P80192 1104 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 GABPAQ06546 454 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 WTAPQ15007 396 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 TEPSINQ96N21 525 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 ZKSCAN3Q9BRR0 538 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 EHD4Q9H223 541 aa13.2□□□□□ -0.3
LINC00539-201ENST00000411525 DHX36Q9H2U1 1008 aaKnown RBP13.2□□□□□ -0.3
LINC00539-201ENST00000411525 EFCC1Q9HA90 598 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms