RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 DNM1Q05193 864 aaKnown RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 SSRP1Q08945 709 aaKnown RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 PPP2R5BQ15173 497 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 SPDYE2Q495Y8 402 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 OTUD7BQ6GQQ9 843 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 FAM173BQ6P4H8 233 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 ZSCAN29Q8IWY8 852 aaPredicted RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 PNMA1Q8ND90 353 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 CEP95Q96GE4 821 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 ALG1Q9BT22 464 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 GDPD2Q9HCC8 539 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 GJB4Q9NTQ9 266 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 RBM28Q9NW13 759 aaKnown RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 ZNF70Q9UC06 446 aaPredicted RBP16.37■□□□□ 0.21
GPNMB-203ENST00000409458 STX8Q9UNK0 236 aa16.37■□□□□ 0.21
GPNMB-203ENST00000409458 ZNF541Q9H0D2 1346 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 FAM196BA6NMK8 535 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 TCP10L2B9ZVM9 353 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 PRPF40AO75400 957 aaKnown RBP16.36■□□□□ 0.21
GPNMB-203ENST00000409458 CCDC82Q8N4S0 544 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 CRACR2BQ8N4Y2 399 aaPredicted RBP16.36■□□□□ 0.21
GPNMB-203ENST00000409458 ZBED3Q96IU2 234 aaPredicted RBP16.36■□□□□ 0.21
GPNMB-203ENST00000409458 TMEM47Q9BQJ4 181 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 TMOD2Q9NZR1 351 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 PI4KBQ9UBF8 816 aa16.36■□□□□ 0.21
GPNMB-203ENST00000409458 IGKV6D-41A0A0C4DH26 115 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 GUCY1A2P33402 732 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 NOVP48745 357 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 EIF6P56537 245 aaKnown RBP16.35■□□□□ 0.21
GPNMB-203ENST00000409458 FUT2Q10981 343 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 TMTC3Q6ZXV5 915 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 FBXO18Q8NFZ0 1043 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 CTCFLQ8NI51 663 aaPredicted RBP16.35■□□□□ 0.21
GPNMB-203ENST00000409458 MYOZ2Q9NPC6 264 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 CNTNAP1P78357 1384 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 SBF1O95248 1867 aa16.35■□□□□ 0.21
GPNMB-203ENST00000409458 NCLP19338 710 aaKnown RBP16.34■□□□□ 0.21
GPNMB-203ENST00000409458 RPS12P25398 132 aaKnown RBP16.34■□□□□ 0.21
GPNMB-203ENST00000409458 ARHGAP27Q6ZUM4 889 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 TRIM22Q8IYM9 498 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 TMEM87AQ8NBN3 555 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 ZSCAN16Q9H4T2 348 aaPredicted RBP16.34■□□□□ 0.21
GPNMB-203ENST00000409458 WNT10BO00744 389 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 FIBPO43427 364 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 GMPSP49915 693 aaPredicted RBP16.34■□□□□ 0.21
GPNMB-203ENST00000409458 ZNF280AP59817 542 aaPredicted RBP16.34■□□□□ 0.21
GPNMB-203ENST00000409458 GRM4Q14833 912 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 VEZTQ9HBM0 779 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 TAOK2Q9UL54 1235 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 GJA3Q9Y6H8 435 aa16.34■□□□□ 0.21
GPNMB-203ENST00000409458 CNTNAP5Q8WYK1 1306 aa16.33■□□□□ 0.21
GPNMB-203ENST00000409458 DEXIO95424 95 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 NBPF9Q3BBW0 867 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 RASGRP2Q7LDG7 609 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 USP48Q86UV5 1035 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 CLEC10AQ8IUN9 316 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 SRBD1Q8N5C6 995 aaKnown RBP16.33■□□□□ 0.2
GPNMB-203ENST00000409458 WASF1Q92558 559 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 MAP3K14Q99558 947 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 SYT17Q9BSW7 474 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 RNF26Q9BY78 433 aaPredicted RBP16.33■□□□□ 0.2
GPNMB-203ENST00000409458 MTMR4Q9NYA4 1195 aa16.33■□□□□ 0.2
GPNMB-203ENST00000409458 EGFRP00533 1210 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 KRT85P78386 507 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 SHROOM1Q2M3G4 852 aaPredicted RBP16.32■□□□□ 0.2
GPNMB-203ENST00000409458 KRT40Q6A162 431 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 METTL16Q86W50 562 aaKnown RBP16.32■□□□□ 0.2
GPNMB-203ENST00000409458 MICALL2Q8IY33 904 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 RGS22Q8NE09 1264 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 FAM151AQ8WW52 585 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 CSRNP1Q96S65 589 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 TRIM34Q9BYJ4 488 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 MYH4Q9Y623 1939 aa16.32■□□□□ 0.2
GPNMB-203ENST00000409458 KIF28PB7ZC32 967 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 MPHOSPH10O00566 681 aaKnown RBP16.31■□□□□ 0.2
GPNMB-203ENST00000409458 PRPF3O43395 683 aaKnown RBP16.31■□□□□ 0.2
GPNMB-203ENST00000409458 MYO1BO43795 1136 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 TOP1P11387 765 aaKnown RBP16.31■□□□□ 0.2
GPNMB-203ENST00000409458 LMNB1P20700 586 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 KIF5BP33176 963 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 TATDN1Q6P1N9 297 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 FOXP4Q8IVH2 680 aaPredicted RBP16.31■□□□□ 0.2
GPNMB-203ENST00000409458 STAG2Q8N3U4 1231 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 MAD2L2Q9UI95 211 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 MTMR7Q9Y216 660 aa16.31■□□□□ 0.2
GPNMB-203ENST00000409458 hCG_1642624A0A1W2PR95 340 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 MMP14P50281 582 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 KIF23Q02241 960 aaPredicted RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 PKN1Q16512 942 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 SKOR2Q2VWA4 1001 aaPredicted RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 CERKLQ49MI3 558 aaPredicted RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 FKBP1CQ5VVH2 108 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 LRRC47Q8N1G4 583 aaKnown RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 GPT2Q8TD30 523 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 DPF2Q92785 391 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 CCDC17Q96LX7 622 aa16.3■□□□□ 0.2
GPNMB-203ENST00000409458 DDX49Q9Y6V7 483 aaKnown RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 GADD45BO75293 160 aaPredicted RBP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 YBX3P16989 372 aaKnown RBP eCLIP16.3■□□□□ 0.2
GPNMB-203ENST00000409458 TRIM29Q14134 588 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms