RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 KAT2BQ92831 832 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 NCAPGQ9BPX3 1015 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 MMP1P03956 469 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 MNAT1P51948 309 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 CTDSPL2Q05D32 466 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 DPYDQ12882 1025 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 CYP26C1Q6V0L0 522 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 UBR1Q8IWV7 1749 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 NWD2Q9ULI1 1742 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 CDHR2Q9BYE9 1310 aa17.93■□□□□ 0.46
CKAP4-201ENST00000378026 TUBB4BP68371 445 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 KRT31Q15323 416 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 MMS22LQ6ZRQ5 1243 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 NUP133Q8WUM0 1156 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 SAMM50Q9Y512 469 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 CCDC57Q2TAC2 916 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 CTCFLQ8NI51 663 aaPredicted RBP17.92■□□□□ 0.46
CKAP4-201ENST00000378026 FAM76AQ8TAV0 307 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 IGDCC4Q8TDY8 1250 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 CTAGE1Q96RT6 745 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 LY9Q9HBG7 655 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 hCG_1642624A0A1W2PR95 340 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 ZNF185O15231 689 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 A1BGP04217 495 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 CUL4BQ13620 913 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 COG1Q8WTW3 980 aa17.92■□□□□ 0.46
CKAP4-201ENST00000378026 GOLGA6CA6NDK9 693 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 GOLGA6DP0CG33 693 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 MAP9Q49MG5 647 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 KANK3Q6NY19 840 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 PAGE5Q96GU1 130 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 POLD4Q9HCU8 107 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 GOLGA6AQ9NYA3 693 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 EPN1Q9Y6I3 576 aaPredicted RBP17.91■□□□□ 0.46
CKAP4-201ENST00000378026 FAM169AQ9Y6X4 670 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 MYH8P13535 1937 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 RILPL1Q5EBL4 403 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 CDKAL1Q5VV42 579 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 BCAS4Q8TDM0 211 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 SRPRBQ9Y5M8 271 aaKnown RBP17.91■□□□□ 0.46
CKAP4-201ENST00000378026 SAR1BQ9Y6B6 198 aa17.91■□□□□ 0.46
CKAP4-201ENST00000378026 EBAG9O00559 213 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 EIF5P55010 431 aaKnown RBP17.9■□□□□ 0.46
CKAP4-201ENST00000378026 CCDC122Q5T0U0 273 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 RRAGBQ5VZM2 374 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 SELENOOQ9BVL4 669 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 ZSWIM5Q9P217 1185 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 REXO2Q9Y3B8 237 aaKnown RBP17.9■□□□□ 0.46
CKAP4-201ENST00000378026 PPP1R3GB7ZBB8 358 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 TUBBP07437 444 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 MCTP2Q6DN12 878 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 GNL3LQ9NVN8 582 aaKnown RBP17.9■□□□□ 0.46
CKAP4-201ENST00000378026 AARSP49588 968 aaKnown RBP eCLIP17.9■□□□□ 0.46
CKAP4-201ENST00000378026 IRAK1P51617 712 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 TRIM22Q8IYM9 498 aa17.9■□□□□ 0.46
CKAP4-201ENST00000378026 SYMPKQ92797 1274 aaKnown RBP17.9■□□□□ 0.46
CKAP4-201ENST00000378026 NDUFA10O95299 355 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 FMNL1O95466 1100 aaPredicted RBP17.89■□□□□ 0.45
CKAP4-201ENST00000378026 UBXN1Q04323 297 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 C2orf54Q08AI8 447 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 TRAPPC11Q7Z392 1133 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 AGPSO00116 658 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 MATR3P43243 847 aaKnown RBP eCLIP17.89■□□□□ 0.45
CKAP4-201ENST00000378026 SPATA20Q8TB22 786 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 VIPAS39Q9H9C1 493 aa17.89■□□□□ 0.45
CKAP4-201ENST00000378026 AFDNP55196 1824 aaKnown RBP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 GOLGA6BA6NDN3 693 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 NBPF26B4DH59 902 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 PHKG2P15735 406 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 MCAMP43121 646 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 NBPF14Q5TI25 921 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 NBPF10Q6P3W6 841 aaKnown RBP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 ELOA2Q8IYF1 753 aaPredicted RBP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 NBPF15Q8N660 670 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 CCDC51Q96ER9 411 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 COPB1P53618 953 aaKnown RBP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 GNGT1P63211 74 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 EEF2KMTQ96G04 330 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 TMEM87BQ96K49 555 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 JADE2Q9NQC1 790 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 VPS54Q9P1Q0 977 aa17.88■□□□□ 0.45
CKAP4-201ENST00000378026 ZC3H4Q9UPT8 1303 aaKnown RBP17.88■□□□□ 0.45
CKAP4-201ENST00000378026 SND1Q7KZF4 910 aaKnown RBP eCLIP17.87■□□□□ 0.451e-16■■■■□ 23.5
CKAP4-201ENST00000378026 KIAA1328Q86T90 577 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 JAKMIP2Q96AA8 810 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 STRN4Q9NRL3 753 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 MYO1AQ9UBC5 1043 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 NFAT5O94916 1531 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 C5P01031 1676 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 C4AP0C0L4 1744 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 C4BP0C0L5 1744 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 RRP36Q96EU6 259 aaKnown RBP17.87■□□□□ 0.45
CKAP4-201ENST00000378026 CAPS2Q9BXY5 557 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 ZNF532Q9HCE3 1301 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 OVOS2A0A0G2JMS6 1433 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 KDM6AO15550 1401 aaPredicted RBP17.87■□□□□ 0.45
CKAP4-201ENST00000378026 WDR19Q8NEZ3 1342 aa17.87■□□□□ 0.45
CKAP4-201ENST00000378026 HNRNPH1P31943 449 aaKnown RBP17.87■□□□□ 0.45
CKAP4-201ENST00000378026 PPARDQ03181 441 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms