RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 V9GYY5 206 aaPredicted RBP12.28□□□□□ -0.44
TPM3-212ENST00000368533 SALL1Q9NSC2 1324 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 KIF28PB7ZC32 967 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 GOLGA8HP0CJ92 632 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 ATP2B2Q01814 1243 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 PDE4BQ07343 736 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 TAF3Q5VWG9 929 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 LARGE2Q8N3Y3 721 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 ARPP21Q9UBL0 812 aaPredicted RBP12.28□□□□□ -0.44
TPM3-212ENST00000368533 GPR75-ASB3A0A0A6YYF3 556 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 NR1I2O75469 434 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 TSPY3P0CV98 308 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 TSPY8P0CW00 308 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 HMGB2P26583 209 aaKnown RBP12.28□□□□□ -0.44
TPM3-212ENST00000368533 RESTQ13127 1097 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 GNL2Q13823 731 aaKnown RBP12.28□□□□□ -0.44
TPM3-212ENST00000368533 PDS5AQ29RF7 1337 aaKnown RBP12.28□□□□□ -0.44
TPM3-212ENST00000368533 TBC1D22AQ8WUA7 517 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 TRIM5Q9C035 493 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 KCNF1Q9H3M0 494 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 OGFRQ9NZT2 677 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 BCS1LQ9Y276 419 aa12.28□□□□□ -0.44
TPM3-212ENST00000368533 SCN9AQ15858 1988 aa12.27□□□□□ -0.44
TPM3-212ENST00000368533 GOLGA6L6A8MZA4 724 aa12.27□□□□□ -0.44
TPM3-212ENST00000368533 KCNA3P22001 575 aa12.27□□□□□ -0.44
TPM3-212ENST00000368533 TMC4Q7Z404 712 aa12.27□□□□□ -0.44
TPM3-212ENST00000368533 FAM200AQ8TCP9 573 aa12.27□□□□□ -0.44
TPM3-212ENST00000368533 CLRN2A0PK11 232 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 AP5Z1O43299 807 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 DHX16O60231 1041 aaKnown RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 VEGFAP15692 232 aaPredicted RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 CRKP46108 304 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 SEC23AQ15436 765 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 AMOTL1Q8IY63 956 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 ZNF444Q8N0Y2 327 aaPredicted RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 FANCBQ8NB91 859 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 LLPHQ9BRT6 129 aaKnown RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 FUCA2Q9BTY2 467 aa12.27□□□□□ -0.45
TPM3-212ENST00000368533 TDRD3Q9H7E2 651 aaKnown RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 MKRN1Q9UHC7 482 aaKnown RBP12.27□□□□□ -0.45
TPM3-212ENST00000368533 SHTN1A0MZ66 631 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 C7orf43Q8WVR3 580 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 C16orf45Q96MC5 204 aaPredicted RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 USP28Q96RU2 1077 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 IL17RBQ9NRM6 502 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 CFAP45Q9UL16 551 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 SLC3A2P08195 630 aaKnown RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 EVCP57679 992 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 TEKT1Q969V4 418 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 DNAJC25Q9H1X3 360 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 DDX19AQ9NUU7 478 aaKnown RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 ANAPC4Q9UJX5 808 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 NRXN2Q9P2S2 1712 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 FAM205AQ6ZU69 1335 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 MPHOSPH10O00566 681 aaKnown RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 LIFRP42702 1097 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 CDK8P49336 464 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 SSRP1Q08945 709 aaKnown RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 NTRK3Q16288 839 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 RBM26Q5T8P6 1007 aaKnown RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 CATIPQ7Z7H3 387 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 NBPF11Q86T75 865 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 SGMS1Q86VZ5 419 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 SPTLC3Q9NUV7 552 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 VPS54Q9P1Q0 977 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.26□□□□□ -0.45
TPM3-212ENST00000368533 MRVI1Q9Y6F6 885 aa12.26□□□□□ -0.45
TPM3-212ENST00000368533 V9GY48 417 aaPredicted RBP12.26□□□□□ -0.45
TPM3-212ENST00000368533 KRT40Q6A162 431 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 CPLX2Q6PUV4 134 aaKnown RBP12.25□□□□□ -0.45
TPM3-212ENST00000368533 STAG2Q8N3U4 1231 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 PGBD1Q96JS3 809 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 ELP1O95163 1332 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 WDHD1O75717 1129 aaPredicted RBP12.25□□□□□ -0.45
TPM3-212ENST00000368533 ME1P48163 572 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 ZNF165P49910 485 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 DACT2Q5SW24 774 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 APOBEC3HQ6NTF7 200 aaKnown RBP12.25□□□□□ -0.45
TPM3-212ENST00000368533 PODNQ7Z5L7 613 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 CBX8Q9HC52 389 aa12.25□□□□□ -0.45
TPM3-212ENST00000368533 PPP4CP60510 307 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 KIAA1524Q8TCG1 905 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 ERCC4Q92889 916 aaPredicted RBP12.24□□□□□ -0.45
TPM3-212ENST00000368533 ZSCAN16Q9H4T2 348 aaPredicted RBP12.24□□□□□ -0.45
TPM3-212ENST00000368533 VAT1LQ9HCJ6 419 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 CLIC4Q9Y696 253 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 RASA1P20936 1047 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 PTGS1P23219 599 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 NR5A1Q13285 461 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 TERF2Q15554 542 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 CCDC73Q6ZRK6 1079 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 LRRC47Q8N1G4 583 aaKnown RBP12.24□□□□□ -0.45
TPM3-212ENST00000368533 FBXO18Q8NFZ0 1043 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 TIGD1Q96MW7 591 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 CLSTN2Q9H4D0 955 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 LTBP1Q14766 1721 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 A0A087WWV3 80 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 TCP10L2B9ZVM9 353 aa12.24□□□□□ -0.45
TPM3-212ENST00000368533 GOLGA6L19H0YKK7 550 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms