RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 MFSD6Q6ZSS7 791 aa10.81□□□□□ -0.68
ATG4A-202ENST00000345734 TMEM87AQ8NBN3 555 aa10.81□□□□□ -0.68
ATG4A-202ENST00000345734 TDRD7Q8NHU6 1098 aaKnown RBP10.81□□□□□ -0.68
ATG4A-202ENST00000345734 CRAMP1Q96RY5 1269 aa10.81□□□□□ -0.68
ATG4A-202ENST00000345734 AATFQ9NY61 560 aaKnown RBP eCLIP10.81□□□□□ -0.686e-7■■■■■ 46.9
ATG4A-202ENST00000345734 ZSWIM5Q9P217 1185 aa10.81□□□□□ -0.68
ATG4A-202ENST00000345734 ANGEL1Q9UNK9 670 aaKnown RBP10.81□□□□□ -0.68
ATG4A-202ENST00000345734 CYP2D7A0A087X1C5 515 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 MMP10P09238 476 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 PPARAQ07869 468 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 C15orf52Q6ZUT6 534 aaKnown RBP10.8□□□□□ -0.68
ATG4A-202ENST00000345734 ZNF804AQ7Z570 1209 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 LAPTM4BQ86VI4 370 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 IGDCC4Q8TDY8 1250 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 STAG1Q8WVM7 1258 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.8□□□□□ -0.68
ATG4A-202ENST00000345734 POLLQ9UGP5 575 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 GGA1Q9UJY5 639 aa10.8□□□□□ -0.68
ATG4A-202ENST00000345734 LRRC37AA6NMS7 1700 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 COL11A2P13942 1736 aaPredicted RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 LTBP1Q14766 1721 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 H3BQV1 296 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 FDPSP14324 419 aaKnown RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 RXRAP19793 462 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 ATP2B4P23634 1241 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 HMGN5P82970 282 aaKnown RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 ZSCAN23Q3MJ62 389 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 ADGRD1Q6QNK2 874 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 TBC1D16Q8TBP0 767 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 BRIP1Q9BX63 1249 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 LY9Q9HBG7 655 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 TOMM22Q9NS69 142 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 TMEM63CQ9P1W3 806 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 MYH15Q9Y2K3 1946 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 PPEF1O14829 653 aaPredicted RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 MBD3O95983 291 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 TMEM67Q5HYA8 995 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 OLFM4Q6UX06 510 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 RETREG3Q86VR2 466 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 DZIP1Q86YF9 867 aaKnown RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 FLAD1Q8NFF5 587 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 FAM163AQ96GL9 167 aaPredicted RBP10.79□□□□□ -0.68
ATG4A-202ENST00000345734 TMEM87BQ96K49 555 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 ZKSCAN3Q9BRR0 538 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 KRT23Q9C075 422 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 CNNM2Q9H8M5 875 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 CD209Q9NNX6 404 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 KIAA1551Q9HCM1 1747 aa10.79□□□□□ -0.68
ATG4A-202ENST00000345734 RGPD3A6NKT7 1758 aaPredicted RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 RGPD4Q7Z3J3 1758 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 IFIT3O14879 490 aaKnown RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 SRGNP10124 158 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 GUCY1B3Q02153 619 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 RESTQ13127 1097 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 EZH2Q15910 746 aaKnown RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 SPTY2D1Q68D10 685 aaPredicted RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 WDR66Q8TBY9 1149 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 PARP3Q9Y6F1 533 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 LDHBP07195 334 aaKnown RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 XRCC6P12956 609 aaKnown RBP eCLIP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 ADD1P35611 737 aaKnown RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 L1TD1Q5T7N2 865 aaKnown RBP10.78□□□□□ -0.68
ATG4A-202ENST00000345734 CTR9Q6PD62 1173 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 APOA5Q6Q788 366 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 NFXL1Q6ZNB6 911 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 CCDC144CPQ8IYA2 1237 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 MYL10Q9BUA6 226 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 ANAPC4Q9UJX5 808 aa10.78□□□□□ -0.68
ATG4A-202ENST00000345734 LAMB1P07942 1786 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 IL1R1P14778 569 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 CDC27P30260 824 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 METAP2P50579 478 aaKnown RBP eCLIP10.77□□□□□ -0.69
ATG4A-202ENST00000345734 MICU3Q86XE3 530 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 SP8Q8IXZ3 490 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 UCN2Q96RP3 112 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 RNF41Q9H4P4 317 aaPredicted RBP10.77□□□□□ -0.69
ATG4A-202ENST00000345734 DCP1AQ9NPI6 582 aaPredicted RBP10.77□□□□□ -0.69
ATG4A-202ENST00000345734 TFIP11Q9UBB9 837 aaKnown RBP10.77□□□□□ -0.69
ATG4A-202ENST00000345734 ATP6V0A2Q9Y487 856 aa10.77□□□□□ -0.69
ATG4A-202ENST00000345734 ECM29Q5VYK3 1845 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 USP17L12C9JPN9 530 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 USP17L21D6R901 530 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 CPLX1O14810 134 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 ACTN4O43707 911 aaKnown RBP10.76□□□□□ -0.69
ATG4A-202ENST00000345734 DHX16O60231 1041 aaKnown RBP10.76□□□□□ -0.69
ATG4A-202ENST00000345734 CYP2D6P10635 497 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 NPR1P16066 1061 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 LIFRP42702 1097 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 ZNF445P59923 1031 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 KRT85P78386 507 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 LSM11P83369 360 aaKnown RBP eCLIP10.76□□□□□ -0.69
ATG4A-202ENST00000345734 OTUD7BQ6GQQ9 843 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 TTC6Q86TZ1 520 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 SGMS1Q86VZ5 419 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 CHMP4CQ96CF2 233 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 CRNKL1Q9BZJ0 848 aaKnown RBP10.76□□□□□ -0.69
ATG4A-202ENST00000345734 ORC3Q9UBD5 711 aaPredicted RBP10.76□□□□□ -0.69
ATG4A-202ENST00000345734 CDK5RAP2Q96SN8 1893 aa10.76□□□□□ -0.69
ATG4A-202ENST00000345734 DUOX1Q9NRD9 1551 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms