RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 DALRD3Q5D0E6 543 aaKnown RBP15.52■□□□□ 0.07
HMGB1-202ENST00000339872 L1TD1Q5T7N2 865 aaKnown RBP15.52■□□□□ 0.07
HMGB1-202ENST00000339872 ANKS1AQ92625 1134 aa15.52■□□□□ 0.07
HMGB1-202ENST00000339872 HLA-DOAP06340 250 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 GABPAQ06546 454 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 MYSM1Q5VVJ2 828 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 NEDD1Q8NHV4 660 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 SERPINB13Q9UIV8 391 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 ISY1Q9ULR0 285 aaKnown RBP15.51■□□□□ 0.07
HMGB1-202ENST00000339872 FER1L6Q2WGJ9 1857 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 CNTNAP5Q8WYK1 1306 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 KIF5BP33176 963 aa15.51■□□□□ 0.07
HMGB1-202ENST00000339872 SIPA1L1O43166 1804 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 MYO3BQ8WXR4 1341 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 hCG_1642624A0A1W2PR95 340 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 PSMD14O00487 310 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 TCP10Q12799 353 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 CFAP100Q494V2 611 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 CCDC183Q5T5S1 534 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 RSBN1LQ6PCB5 846 aaPredicted RBP15.5■□□□□ 0.07
HMGB1-202ENST00000339872 TMEM47Q9BQJ4 181 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 KCNJ14Q9UNX9 436 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 PSDA5PKW4 1024 aaPredicted RBP15.5■□□□□ 0.07
HMGB1-202ENST00000339872 PRPF3O43395 683 aaKnown RBP15.5■□□□□ 0.07
HMGB1-202ENST00000339872 MMP1P03956 469 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 ZFPM1Q8IX07 1006 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 NIM1KQ8IY84 436 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 SRBD1Q8N5C6 995 aaKnown RBP15.5■□□□□ 0.07
HMGB1-202ENST00000339872 PGBD1Q96JS3 809 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 VPS33BQ9H267 617 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 SWAP70Q9UH65 585 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 RCOR1Q9UKL0 485 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 MTMR7Q9Y216 660 aa15.5■□□□□ 0.07
HMGB1-202ENST00000339872 V9GY48 417 aaPredicted RBP15.5■□□□□ 0.07
HMGB1-202ENST00000339872 SAFBQ15424 915 aaKnown RBP eCLIP15.49■□□□□ 0.07
HMGB1-202ENST00000339872 PKN1Q16512 942 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 BICD2Q8TD16 824 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 UPF1Q92900 1129 aaKnown RBP eCLIP15.49■□□□□ 0.071e-11■■■□□ 16.8
HMGB1-202ENST00000339872 CEP95Q96GE4 821 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 IDI2Q9BXS1 227 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 PLIN4Q96Q06 1357 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 MAP3K14Q99558 947 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 TDRD3Q9H7E2 651 aaKnown RBP15.49■□□□□ 0.07
HMGB1-202ENST00000339872 GRPEL1Q9HAV7 217 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 RTEL1Q9NZ71 1219 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 FAM198AQ9UFP1 575 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 CLIC4Q9Y696 253 aa15.49■□□□□ 0.07
HMGB1-202ENST00000339872 VIL1P09327 827 aaKnown RBP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 XBP1P17861 261 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 LIG1P18858 919 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 U2AF2P26368 475 aaKnown RBP eCLIP15.48■□□□□ 0.071e-7■■■■■ 37.5
HMGB1-202ENST00000339872 GRM4Q14833 912 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 DIS3L2Q8IYB7 885 aaKnown RBP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 SGIP1Q9BQI5 828 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 TAOK3Q9H2K8 898 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 VPS54Q9P1Q0 977 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 ZNRF3Q9ULT6 936 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 AKR1B1P15121 316 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 MRE11P49959 708 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 LRSAM1Q6UWE0 723 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 ZSCAN29Q8IWY8 852 aaPredicted RBP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 STAG2Q8N3U4 1231 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 POLR3EQ9NVU0 708 aa15.48■□□□□ 0.07
HMGB1-202ENST00000339872 BAZ2BQ9UIF8 2168 aaKnown RBP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 ZBTB12Q9Y330 459 aaPredicted RBP15.48■□□□□ 0.07
HMGB1-202ENST00000339872 BTBD18B2RXH4 712 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 SHMT1P34896 483 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 ME1P48163 572 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 STK38Q15208 465 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 PIBF1Q8WXW3 757 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 PRMT6Q96LA8 375 aaPredicted RBP15.47■□□□□ 0.07
HMGB1-202ENST00000339872 EHD4Q9H223 541 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 DHX36Q9H2U1 1008 aaKnown RBP15.47■□□□□ 0.07
HMGB1-202ENST00000339872 MAD2L2Q9UI95 211 aa15.47■□□□□ 0.07
HMGB1-202ENST00000339872 DDTLA6NHG4 134 aaPredicted RBP15.46■□□□□ 0.07
HMGB1-202ENST00000339872 TOP1P11387 765 aaKnown RBP15.46■□□□□ 0.07
HMGB1-202ENST00000339872 NOSTRINQ8IVI9 506 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 HDAC9Q9UKV0 1011 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 BCS1LQ9Y276 419 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 CD2APQ9Y5K6 639 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 GREB1LQ9C091 1923 aaPredicted RBP15.46■□□□□ 0.07
HMGB1-202ENST00000339872 YEATS4O95619 227 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 SLURP2P0DP57 97 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 XRCC6P12956 609 aaKnown RBP eCLIP15.46■□□□□ 0.07
HMGB1-202ENST00000339872 NASPP49321 788 aaPredicted RBP15.46■□□□□ 0.07
HMGB1-202ENST00000339872 ANO1Q5XXA6 986 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 RASGRP2Q7LDG7 609 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 OGFOD1Q8N543 542 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 LINC00301Q8NCQ3 95 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 SHISA4Q96DD7 197 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 GMLQ99445 158 aa15.46■□□□□ 0.07
HMGB1-202ENST00000339872 NPM3O75607 178 aaKnown RBP15.45■□□□□ 0.06
HMGB1-202ENST00000339872 GNAQP50148 359 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 SF3A1Q15459 793 aaKnown RBP15.45■□□□□ 0.06
HMGB1-202ENST00000339872 FOXP1Q9H334 677 aaPredicted RBP15.45■□□□□ 0.06
HMGB1-202ENST00000339872 DNAJC18Q9H819 358 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 MTMR4Q9NYA4 1195 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 MYH4Q9Y623 1939 aa15.45■□□□□ 0.06
HMGB1-202ENST00000339872 FAM196BA6NMK8 535 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms