RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MYO3BQ8WXR4 1341 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 hCG_1642624A0A1W2PR95 340 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 H3BQV1 296 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TRAK2O60296 914 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 PRPF40AO75400 957 aaKnown RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 PLEKHA8P1O95397 391 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 EGFRP00533 1210 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 AKR1B1P15121 316 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 GUCY1A2P33402 732 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 DNM1Q05193 864 aaKnown RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 TROAPQ12815 778 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SHROOM1Q2M3G4 852 aaPredicted RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 IFFO2Q5TF58 517 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 CIAPIN1Q6FI81 312 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TTC6Q86TZ1 520 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TMTC2Q8N394 836 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.83□□□□□ -1.64
MCF2-201ENST00000338585 IDI2Q9BXS1 227 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SLC26A6Q9BXS9 759 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 DNAJC18Q9H819 358 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 LMBRD1Q9NUN5 540 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SERPINB13Q9UIV8 391 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SCAF8Q9UPN6 1271 aaKnown RBP4.83□□□□□ -1.64
MCF2-201ENST00000338585 MTMR7Q9Y216 660 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TCHHQ07283 1943 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 SIPA1L1O43166 1804 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 LTBP3Q9NS15 1303 aa4.83□□□□□ -1.64
MCF2-201ENST00000338585 TCP10L2B9ZVM9 353 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 NCLP19338 710 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 SHMT1P34896 483 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 RESTQ13127 1097 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 DLGAP5Q15398 846 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 CATIPQ7Z7H3 387 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 NBPF11Q86T75 865 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ZSCAN29Q8IWY8 852 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 OGFOD1Q8N543 542 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 NEDD1Q8NHV4 660 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ALG1Q9BT22 464 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 STX8Q9UNK0 236 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 UTRNP46939 3433 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 SRCAPQ6ZRS2 3230 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ARFGEF1Q9Y6D6 1849 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ZNF541Q9H0D2 1346 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 GOLGA6L22H0YM25 854 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 FIBPO43427 364 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 HLA-DOAP06340 250 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 IFNAR1P17181 557 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 EIF6P56537 245 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 FUT2Q10981 343 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 NBPF9Q3BBW0 867 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 CPLX2Q6PUV4 134 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 ARHGAP27Q6ZUM4 889 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 DGKHQ86XP1 1220 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 CRACR2BQ8N4Y2 399 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 PNMA1Q8ND90 353 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 AGBL3Q8NEM8 1001 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 CEP95Q96GE4 821 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 C8orf76Q96K31 380 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 TMEM47Q9BQJ4 181 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 GZF1Q9H116 711 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 KAT14Q9H8E8 782 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 TFIP11Q9UBB9 837 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 ZNF70Q9UC06 446 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 GJA3Q9Y6H8 435 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 FZD9O00144 591 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 GADD45BO75293 160 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 CDKL5O76039 1030 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 DDAH1O94760 285 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 FMNL1O95466 1100 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 GMPSP49915 693 aaPredicted RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 RCAN1P53805 252 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 SSRP1Q08945 709 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 RBM26Q5T8P6 1007 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 USP48Q86UV5 1035 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 STAG2Q8N3U4 1231 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 SRBD1Q8N5C6 995 aaKnown RBP4.82□□□□□ -1.64
MCF2-201ENST00000338585 FBXO18Q8NFZ0 1043 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ANKS1AQ92625 1134 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 SHISA4Q96DD7 197 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 SYT17Q9BSW7 474 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 FTOQ9C0B1 505 aaKnown RBP eCLIP4.82□□□□□ -1.64
MCF2-201ENST00000338585 VEZTQ9HBM0 779 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 ZNF287Q9HBT7 754 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 TCP11L1Q9NUJ3 509 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 HDAC9Q9UKV0 1011 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 KIF3AQ9Y496 699 aa4.82□□□□□ -1.64
MCF2-201ENST00000338585 CNTNAP1P78357 1384 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 BAZ2BQ9UIF8 2168 aaKnown RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 ASTN2O75129 1339 aaPredicted RBP4.81□□□□□ -1.64
MCF2-201ENST00000338585 STK36Q9NRP7 1315 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 CCDC196A0A1B0GTZ2 297 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 KIF28PB7ZC32 967 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 WNT10BO00744 389 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 ENTPD3O75355 529 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 GOLGA8HP0CJ92 632 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 CALM1P0DP23 149 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 CALM2P0DP24 149 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 CALM3P0DP25 149 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 JAG1P78504 1218 aa4.81□□□□□ -1.64
MCF2-201ENST00000338585 RRP1BQ14684 758 aaKnown RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms