RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 NID2Q14112 1375 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 DICER1Q9UPY3 1922 aaKnown RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 H7C1D1 291 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 DDAH1O94760 285 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 NTRK3Q16288 839 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 FOXD4L6Q3SYB3 417 aaPredicted RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 FKBP1CQ5VVH2 108 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 FOXD4L3Q6VB84 417 aaPredicted RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 CMTR1Q8N1G2 835 aaKnown RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 PNMA1Q8ND90 353 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 CEP95Q96GE4 821 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 MYH8P13535 1937 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 CNTNAP1P78357 1384 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 BAG4O95429 457 aaKnown RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 MCM4P33991 863 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 PPP2R5BQ15173 497 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 GPR162Q16538 588 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 CDC37L1Q7L3B6 337 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 TMEM47Q9BQJ4 181 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 TMEM39BQ9GZU3 492 aa17.12■□□□□ 0.33
CBX3-201ENST00000337620 SCAF8Q9UPN6 1271 aaKnown RBP17.12■□□□□ 0.33
CBX3-201ENST00000337620 F13A1P00488 732 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 CERKLQ49MI3 558 aaPredicted RBP17.11■□□□□ 0.33
CBX3-201ENST00000337620 C9orf131Q5VYM1 1079 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.11■□□□□ 0.33
CBX3-201ENST00000337620 SLC26A6Q9BXS9 759 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 TAOK2Q9UL54 1235 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 MTMR7Q9Y216 660 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 IFNAR1P17181 557 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 SSRP1Q08945 709 aaKnown RBP17.11■□□□□ 0.33
CBX3-201ENST00000337620 KIF4BQ2VIQ3 1234 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 FAM83AQ86UY5 434 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 CTCFLQ8NI51 663 aaPredicted RBP17.11■□□□□ 0.33
CBX3-201ENST00000337620 CHAMP1Q96JM3 812 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 CCDC17Q96LX7 622 aa17.11■□□□□ 0.33
CBX3-201ENST00000337620 COL2A1P02458 1487 aaPredicted RBP17.1■□□□□ 0.33
CBX3-201ENST00000337620 SIPA1L1O43166 1804 aa17.1■□□□□ 0.33
CBX3-201ENST00000337620 TNNI2P48788 182 aa17.1■□□□□ 0.33
CBX3-201ENST00000337620 CLEC17AQ6ZS10 378 aa17.1■□□□□ 0.33
CBX3-201ENST00000337620 FERMT3Q86UX7 667 aa17.1■□□□□ 0.33
CBX3-201ENST00000337620 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.1■□□□□ 0.33
CBX3-201ENST00000337620 RBM28Q9NW13 759 aaKnown RBP17.1■□□□□ 0.33
CBX3-201ENST00000337620 MTMR4Q9NYA4 1195 aa17.1■□□□□ 0.33
CBX3-201ENST00000337620 DDNO94850 711 aaPredicted RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 GUCY1B3Q02153 619 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 TATDN1Q6P1N9 297 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 METTL16Q86W50 562 aaKnown RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 GPRC5DQ9NZD1 345 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 PLIN4Q96Q06 1357 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 ASTN2O75129 1339 aaPredicted RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 FMNL1O95466 1100 aaPredicted RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 TOP1P11387 765 aaKnown RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 MCTP1Q6DN14 999 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 CLEC10AQ8IUN9 316 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 TRIM22Q8IYM9 498 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 C8orf76Q96K31 380 aa17.09■□□□□ 0.33
CBX3-201ENST00000337620 HERC5Q9UII4 1024 aaKnown RBP17.09■□□□□ 0.33
CBX3-201ENST00000337620 IGKV6D-41A0A0C4DH26 115 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 GDF11O95390 407 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 PLEKHA8P1O95397 391 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 KIF5BP33176 963 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 RASA3Q14644 834 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 CDAN1Q8IWY9 1227 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 ALG1Q9BT22 464 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 CLIP2Q9UDT6 1046 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 HACL1Q9UJ83 578 aa17.08■□□□□ 0.33
CBX3-201ENST00000337620 EPS15P42566 896 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 ATP2B2Q01814 1243 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 TNFAIP1Q13829 316 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 SHROOM1Q2M3G4 852 aaPredicted RBP17.08■□□□□ 0.32
CBX3-201ENST00000337620 NBPF11Q86T75 865 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 AIFM3Q96NN9 605 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 ATP6V1DQ9Y5K8 247 aa17.08■□□□□ 0.32
CBX3-201ENST00000337620 UBE2Q2LH0YL09 131 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 GOLGA6L22H0YM25 854 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 TTLL1O95922 423 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 NOVP48745 357 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 OTUD7BQ6GQQ9 843 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 TMTC3Q6ZXV5 915 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 MIGA2Q7L4E1 593 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 GJB4Q9NTQ9 266 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 STK36Q9NRP7 1315 aa17.07■□□□□ 0.32
CBX3-201ENST00000337620 DDX11L8A8MPP1 907 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 AKAP17AQ02040 695 aaKnown RBP17.06■□□□□ 0.32
CBX3-201ENST00000337620 ABCB5Q2M3G0 1257 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 TRPM4Q8TD43 1214 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 MAP3K14Q99558 947 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 GUCY1A2P33402 732 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 GRM4Q14833 912 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 LRRC47Q8N1G4 583 aaKnown RBP17.06■□□□□ 0.32
CBX3-201ENST00000337620 SRBD1Q8N5C6 995 aaKnown RBP17.06■□□□□ 0.32
CBX3-201ENST00000337620 WASF1Q92558 559 aa17.06■□□□□ 0.32
CBX3-201ENST00000337620 DEXIO95424 95 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 SEPT2Q15019 361 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 STAG2Q8N3U4 1231 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 FBXO18Q8NFZ0 1043 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 CABP5Q9NP86 173 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 PGAP2Q9UHJ9 254 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 MAD2L2Q9UI95 211 aa17.05■□□□□ 0.32
CBX3-201ENST00000337620 V9GY48 417 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms