RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 MXD3Q9BW11 206 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 XPO4Q9C0E2 1151 aaKnown RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 PCDHA5Q9Y5H7 936 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 YEATS4O95619 227 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 VEGFAP15692 232 aaPredicted RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 ST5P78524 1137 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 TCP10Q12799 353 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 IKQ13123 557 aaPredicted RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 RASGRP2Q7LDG7 609 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 SMYD4Q8IYR2 804 aaPredicted RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 CCAR2Q8N163 923 aaKnown RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 EPSTI1Q96J88 318 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 BLZF1Q9H2G9 400 aa10.66□□□□□ -0.7
PRDM9-201ENST00000296682 FAM217BQ9NTX9 383 aaPredicted RBP10.66□□□□□ -0.7
PRDM9-201ENST00000296682 HSPA1LP34931 641 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 NSUN4Q96CB9 384 aaKnown RBP10.65□□□□□ -0.7
PRDM9-201ENST00000296682 UBA5Q9GZZ9 404 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 DCP1AQ9NPI6 582 aaPredicted RBP10.65□□□□□ -0.7
PRDM9-201ENST00000296682 QSER1Q2KHR3 1735 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 UBASH3AP57075 661 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 ALX1Q15699 326 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 SHC4Q6S5L8 630 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 GJD4Q96KN9 370 aaPredicted RBP10.65□□□□□ -0.7
PRDM9-201ENST00000296682 KCNF1Q9H3M0 494 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 HOOK1Q9UJC3 728 aaKnown RBP10.65□□□□□ -0.7
PRDM9-201ENST00000296682 SLURP2P0DP57 97 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 IFNAR1P17181 557 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 ERCC3P19447 782 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 LIFRP42702 1097 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 SF3B3Q15393 1217 aaKnown RBP10.65□□□□□ -0.7
PRDM9-201ENST00000296682 ZNF804AQ7Z570 1209 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 POLR3EQ9NVU0 708 aa10.65□□□□□ -0.7
PRDM9-201ENST00000296682 FMNL1O95466 1100 aaPredicted RBP10.64□□□□□ -0.71
PRDM9-201ENST00000296682 KRT2P35908 639 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CLEC10AQ8IUN9 316 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 GPIHBP1Q8IV16 184 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 SMARCE1Q969G3 411 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 ZC3H12CQ9C0D7 883 aaKnown RBP10.64□□□□□ -0.71
PRDM9-201ENST00000296682 GGA1Q9UJY5 639 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 MYH2Q9UKX2 1941 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CCDC194A0A1B0GVG4 234 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CMA1P23946 247 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CACNB3P54284 484 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 SPTY2D1Q68D10 685 aaPredicted RBP10.64□□□□□ -0.71
PRDM9-201ENST00000296682 BARGINQ6ZT62 677 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 STAG1Q8WVM7 1258 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 MTA3Q9BTC8 594 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CSRNP2Q9H175 543 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 LRRC4BQ9NT99 713 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 NRXN2Q9P2S2 1712 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 MMP1P03956 469 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 SFPQP23246 707 aaKnown RBP eCLIP10.64□□□□□ -0.71
PRDM9-201ENST00000296682 VPS72Q15906 364 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 STAG2Q8N3U4 1231 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 CCDC34Q96HJ3 373 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 FANCLQ9NW38 375 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 MROH7-TTC4A0A0A0MT08 1334 aa10.64□□□□□ -0.71
PRDM9-201ENST00000296682 BTDP43251 543 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 NTRK3Q16288 839 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 PNMA1Q8ND90 353 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 GPCPD1Q9NPB8 672 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 FAM237AA0A1B0GTK4 181 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 FAM196BA6NMK8 535 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 GPSM2P81274 684 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 TMED8Q6PL24 325 aaPredicted RBP10.63□□□□□ -0.71
PRDM9-201ENST00000296682 ENGASEQ8NFI3 743 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 RIOK1Q9BRS2 568 aaKnown RBP10.63□□□□□ -0.71
PRDM9-201ENST00000296682 MYH6P13533 1939 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 IGSF3O75054 1194 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 APBA3O96018 575 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 TPM2P07951 284 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 PLCD1P51178 756 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 RILPL1Q5EBL4 403 aa10.63□□□□□ -0.71
PRDM9-201ENST00000296682 EARS2Q5JPH6 523 aaKnown RBP10.63□□□□□ -0.71
PRDM9-201ENST00000296682 FRMPD2Q68DX3 1309 aaPredicted RBP10.63□□□□□ -0.71
PRDM9-201ENST00000296682 UBR3Q6ZT12 1888 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 SMTNL1A8MU46 457 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 SSBP05455 408 aaKnown RBP eCLIP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 PTGDRQ13258 359 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 USP17L2Q6R6M4 530 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 TRIM34Q9BYJ4 488 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 PDS5AQ29RF7 1337 aaKnown RBP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 TPM3P06753 285 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 LDHCP07864 332 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 PRR29P0C7W0 189 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 FANCCQ00597 558 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 AXDND1Q5T1B0 1012 aaPredicted RBP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 PRR5LQ6MZQ0 368 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 NBPF11Q86T75 865 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 SGMS1Q86VZ5 419 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 KIAA0825Q8IV33 1275 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 LRRC47Q8N1G4 583 aaKnown RBP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 TDRD7Q8NHU6 1098 aaKnown RBP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 ZNF384Q8TF68 577 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 DBNDD1Q9H9R9 158 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 TOP1P11387 765 aaKnown RBP10.62□□□□□ -0.71
PRDM9-201ENST00000296682 IQCB1Q15051 598 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 PTPN14Q15678 1187 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 CCDC96Q2M329 555 aa10.62□□□□□ -0.71
PRDM9-201ENST00000296682 LETM2Q2VYF4 491 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms