RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 RTFDC1Q9BY42 306 aaPredicted RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 RNF26Q9BY78 433 aaPredicted RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 TTF2Q9UNY4 1162 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 BAZ2AQ9UIF9 1905 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 CACNB3P54284 484 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 TMTC3Q6ZXV5 915 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 CLEC10AQ8IUN9 316 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 BRMS1Q9HCU9 246 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 CLIP2Q9UDT6 1046 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 RREB1Q92766 1687 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 STK36Q9NRP7 1315 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 WNT7AO00755 349 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 ADAMTS3O15072 1205 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 HS1BP3Q53T59 392 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 HEATR3Q7Z4Q2 680 aa13.19□□□□□ -0.3
CUX1-202ENST00000292538 RBM28Q9NW13 759 aaKnown RBP13.19□□□□□ -0.3
CUX1-202ENST00000292538 ORC4O43929 436 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 CALM1P0DP23 149 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 CALM2P0DP24 149 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 CALM3P0DP25 149 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 CHRNA5P30532 468 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 MCM7P33993 719 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 LRMPQ12912 555 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 PTPN21Q16825 1174 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 RILPL1Q5EBL4 403 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 EYA3Q99504 573 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 FOXP1Q9H334 677 aaPredicted RBP13.18□□□□□ -0.3
CUX1-202ENST00000292538 ANO8Q9HCE9 1232 aaPredicted RBP13.18□□□□□ -0.3
CUX1-202ENST00000292538 BCORQ6W2J9 1755 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 SMC2O95347 1197 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 SRGNP10124 158 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 CDK8P49336 464 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 TCP10Q12799 353 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 RCSD1Q6JBY9 416 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 KIAA0825Q8IV33 1275 aa13.18□□□□□ -0.3
CUX1-202ENST00000292538 NAT10Q9H0A0 1025 aaKnown RBP13.18□□□□□ -0.3
CUX1-202ENST00000292538 TRIM75PA6NK02 468 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 GOLGA6L6A8MZA4 724 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 MPHOSPH10O00566 681 aaKnown RBP13.17□□□□□ -0.3
CUX1-202ENST00000292538 PRPF3O43395 683 aaKnown RBP13.17□□□□□ -0.3
CUX1-202ENST00000292538 RXRBP28702 533 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 KIF5BP33176 963 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 AFMP43652 599 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 SBK1Q52WX2 424 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 USP17L2Q6R6M4 530 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 STAMQ92783 540 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 CSRNP2Q9H175 543 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 TNRC6CQ9HCJ0 1690 aaKnown RBP13.17□□□□□ -0.3
CUX1-202ENST00000292538 THSD7AQ9UPZ6 1657 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 PPP6R2O75170 966 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 DDAH1O94760 285 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 LMOD1P29536 600 aaPredicted RBP13.17□□□□□ -0.3
CUX1-202ENST00000292538 ZNF75DP51815 510 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 IQCB1Q15051 598 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 DHX58Q96C10 678 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 EPSTI1Q96J88 318 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 CRAMP1Q96RY5 1269 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 FAM13BQ9NYF5 915 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 ATP6V0A2Q9Y487 856 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 PCDHAC2Q9Y5I4 1007 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 FLT1P17948 1338 aa13.17□□□□□ -0.3
CUX1-202ENST00000292538 VWA3AA6NCI4 1184 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 SCG2P13521 617 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 IL1R1P14778 569 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 CASP1P29466 404 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 CDC25AP30304 524 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 EN1Q05925 392 aaPredicted RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 FUT2Q10981 343 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 C2CD5Q86YS7 1000 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 DHX40Q8IX18 779 aaKnown RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 UBA5Q9GZZ9 404 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 SERTAD1Q9UHV2 236 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 CACNA1SQ13698 1873 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 CUTAO60888 179 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 PCP11498 1178 aaKnown RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 ARID5BQ14865 1188 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 ZNF772Q68DY9 489 aaPredicted RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 SP8Q8IXZ3 490 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 TMEM47Q9BQJ4 181 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 USP40Q9NVE5 1235 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 MKRN1Q9UHC7 482 aaKnown RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 PYCARDQ9ULZ3 195 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 DAGLAQ9Y4D2 1042 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 NHSQ6T4R5 1651 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 PDS5AQ29RF7 1337 aaKnown RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 FRMPD2Q68DX3 1309 aaPredicted RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 MYH13Q9UKX3 1938 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 SCN7AQ01118 1682 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 FAM196BA6NMK8 535 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 FGRP09769 529 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 RASA1P20936 1047 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 HOXA10P31260 410 aaPredicted RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 ZSCAN29Q8IWY8 852 aaPredicted RBP13.16□□□□□ -0.3
CUX1-202ENST00000292538 CERS5Q8N5B7 392 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 PHF20Q9BVI0 1012 aa13.16□□□□□ -0.3
CUX1-202ENST00000292538 NPR1P16066 1061 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 RESP18Q5W5W9 173 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 LRRC47Q8N1G4 583 aaKnown RBP13.15□□□□□ -0.3
CUX1-202ENST00000292538 MTA3Q9BTC8 594 aa13.15□□□□□ -0.3
CUX1-202ENST00000292538 PCDHA5Q9Y5H7 936 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms