RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 CCDC181Q5TID7 509 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 CNNM3Q8NE01 707 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 KANSL2Q9H9L4 492 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 GPR75-ASB3A0A0A6YYF3 556 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 PARP1P09874 1014 aaKnown RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 CALRP27797 417 aaKnown RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 CUL5Q93034 780 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 STX8Q9UNK0 236 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 KLRG2A4D1S0 409 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 ERCC5P28715 1186 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 MAP3K9P80192 1104 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 NONOQ15233 471 aaKnown RBP eCLIP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 ZNF771Q7L3S4 317 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 DCP1AQ9NPI6 582 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 TYRO3Q06418 890 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 ZNHIT6Q9NWK9 470 aaKnown RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 IKBKBO14920 756 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 SCG2P13521 617 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 SCRN1Q12765 414 aa9.34□□□□□ -0.91
PTPN3-201ENST00000262539 CICQ96RK0 1608 aaPredicted RBP9.34□□□□□ -0.91
PTPN3-201ENST00000262539 B4DLN1 442 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 POTEJP0CG39 1038 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 IL1R1P14778 569 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 LINC00301Q8NCQ3 95 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 FEZ1Q99689 392 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 SPZ1Q9BXG8 430 aa9.34□□□□□ -0.92
PTPN3-201ENST00000262539 NID2Q14112 1375 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 SAMD3Q8N6K7 520 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 EHD4Q9H223 541 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 BIN2Q9UBW5 565 aaPredicted RBP9.33□□□□□ -0.92
PTPN3-201ENST00000262539 SERPINB13Q9UIV8 391 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 ZKSCAN5Q9Y2L8 839 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 COL18A1P39060 1754 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 TBC1D9BQ66K14 1250 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 CALML4Q96GE6 196 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 GBP2P32456 591 aaPredicted RBP9.33□□□□□ -0.92
PTPN3-201ENST00000262539 FKBP1CQ5VVH2 108 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 STXBP4Q6ZWJ1 553 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 TMTC3Q6ZXV5 915 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 PNMA1Q8ND90 353 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 ZDHHC9Q9Y397 364 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 SPEF2Q9C093 1822 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 FGRP09769 529 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 TFAP4Q01664 338 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 MIGA1Q8NAN2 632 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 SFPQP23246 707 aaKnown RBP eCLIP9.33□□□□□ -0.92
PTPN3-201ENST00000262539 LCORLQ8N3X6 602 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 GSDMAQ96QA5 445 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 IMPACTQ9P2X3 320 aa9.33□□□□□ -0.92
PTPN3-201ENST00000262539 STRIP1Q5VSL9 837 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 RIOK1Q9BRS2 568 aaKnown RBP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 MAF1Q9H063 256 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 M0R2C6 588 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 GYS1P13807 737 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 U2AF2P26368 475 aaKnown RBP eCLIP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 LONP1P36776 959 aaKnown RBP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 C12orf60Q5U649 245 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 DUOX1Q9NRD9 1551 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 PDLIM2Q96JY6 352 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 HOMER2Q9NSB8 354 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 CPA1P15085 419 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 RFX1P22670 979 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 NOM1Q5C9Z4 860 aaKnown RBP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 CDC37L1Q7L3B6 337 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 C2CD5Q86YS7 1000 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 TFIP11Q9UBB9 837 aaKnown RBP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 COMMD10Q9Y6G5 202 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 ZSCAN12O43309 604 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 PRPHP41219 470 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 MYL5Q02045 173 aa9.32□□□□□ -0.92
PTPN3-201ENST00000262539 HERC5Q9UII4 1024 aaKnown RBP9.32□□□□□ -0.92
PTPN3-201ENST00000262539 CHURC1Q8WUH1 139 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 MPHOSPH6Q99547 160 aaKnown RBP9.31□□□□□ -0.92
PTPN3-201ENST00000262539 ARHGEF10LQ9HCE6 1279 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 HSP90B2PQ58FF3 399 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 SRP68Q9UHB9 627 aaKnown RBP9.31□□□□□ -0.92
PTPN3-201ENST00000262539 MMP1P03956 469 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 BTDP43251 543 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 PRIMPOLQ96LW4 560 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 USP28Q96RU2 1077 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 ARGLU1Q9NWB6 273 aaPredicted RBP9.31□□□□□ -0.92
PTPN3-201ENST00000262539 KCNH3Q9ULD8 1083 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 TRIM14Q14142 442 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 TMEM63CQ9P1W3 806 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.31□□□□□ -0.92
PTPN3-201ENST00000262539 MMP10P09238 476 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 TM4SF1P30408 202 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 SCARF1Q14162 830 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 DCAF15Q66K64 600 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 NT5C3AQ9H0P0 336 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 ZSWIM5Q9P217 1185 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 DKC1O60832 514 aaKnown RBP eCLIP9.31□□□□□ -0.92
PTPN3-201ENST00000262539 PTPREP23469 700 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 MECOMQ03112 1051 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 TTC38Q5R3I4 469 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 SARM1Q6SZW1 724 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 STOX1Q6ZVD7 989 aa9.31□□□□□ -0.92
PTPN3-201ENST00000262539 PSMA7O14818 248 aa9.3□□□□□ -0.92
PTPN3-201ENST00000262539 PPP2R3AQ06190 1150 aa9.3□□□□□ -0.92
PTPN3-201ENST00000262539 SEPT2Q15019 361 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms