RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZNF18P17022 549 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 ELF2Q15723 593 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 SEPT12Q8IYM1 358 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 BSDC1Q9NW68 430 aaPredicted RBP18.75■□□□□ 0.59
HOXD3-201ENST00000249440 AATFQ9NY61 560 aaKnown RBP eCLIP18.75■□□□□ 0.59
HOXD3-201ENST00000249440 VPS54Q9P1Q0 977 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 BRWD3Q6RI45 1802 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 FMR1Q06787 632 aaKnown RBP eCLIP18.75■□□□□ 0.59
HOXD3-201ENST00000249440 PKN1Q16512 942 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 UTP14CQ5TAP6 766 aaKnown RBP18.75■□□□□ 0.59
HOXD3-201ENST00000249440 INTS13Q9NVM9 706 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 DUOX1Q9NRD9 1551 aa18.75■□□□□ 0.59
HOXD3-201ENST00000249440 BMP15O95972 392 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 ERCC5P28715 1186 aaPredicted RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 DMTNQ08495 405 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 TBX2Q13207 712 aaPredicted RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 KMT5BQ4FZB7 885 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 CT47A1Q5JQC4 288 aaPredicted RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 SPECC1LQ69YQ0 1117 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 BRMS1Q9HCU9 246 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 A0A1B0GUL6 1792 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 KCNQ4P56696 695 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 SF3B3Q15393 1217 aaKnown RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 HSP90AA4PQ58FG1 418 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 GTPBP4Q9BZE4 634 aaKnown RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 DNAI1Q9UI46 699 aa18.74■□□□□ 0.59
HOXD3-201ENST00000249440 V9GY48 417 aaPredicted RBP18.74■□□□□ 0.59
HOXD3-201ENST00000249440 FGRP09769 529 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 PLCD1P51178 756 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 FUT2Q10981 343 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 ZNF827Q17R98 1081 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 USP49Q70CQ1 688 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 GRAMD1CQ8IYS0 662 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 FERMT2Q96AC1 680 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.73■□□□□ 0.59
HOXD3-201ENST00000249440 COL4A1P02462 1669 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 COL1A1P02452 1464 aaPredicted RBP18.73■□□□□ 0.59
HOXD3-201ENST00000249440 STX10O60499 249 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 DYNLL1P63167 89 aaKnown RBP18.73■□□□□ 0.59
HOXD3-201ENST00000249440 TROAPQ12815 778 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 ERFEQ4G0M1 354 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 TMEM139Q8IV31 216 aa18.73■□□□□ 0.59
HOXD3-201ENST00000249440 BAG1Q99933 345 aaPredicted RBP18.73■□□□□ 0.59
HOXD3-201ENST00000249440 SMIM22K7EJ46 135 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 PTPN21Q16825 1174 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 FBXO38Q6PIJ6 1188 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 TRIM65Q6PJ69 517 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 REXO1L1PQ8IX06 675 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 SMARCC1Q92922 1105 aaPredicted RBP18.72■□□□□ 0.59
HOXD3-201ENST00000249440 DHX58Q96C10 678 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 SHISA4Q96DD7 197 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 MINPP1Q9UNW1 487 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 TAF1P21675 1872 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 DLEC1Q9Y238 1755 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 GOLGA6L9A6NEM1 432 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 DDAH1O94760 285 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 SLFN14P0C7P3 912 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 GOLGA8FQ08AF8 430 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 GOLGA8DPQ0D2H9 430 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 TRMT44Q8IYL2 757 aaKnown RBP18.72■□□□□ 0.59
HOXD3-201ENST00000249440 FAM84BQ96KN1 310 aaPredicted RBP18.72■□□□□ 0.59
HOXD3-201ENST00000249440 PRDM4Q9UKN5 801 aa18.72■□□□□ 0.59
HOXD3-201ENST00000249440 CYP2D7A0A087X1C5 515 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 SEMA3EO15041 775 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 PRDM1O75626 825 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 PLEKHA8P1O95397 391 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 CTR9Q6PD62 1173 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 POTEAQ6S8J7 498 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 SRRTQ9BXP5 876 aaKnown RBP18.71■□□□□ 0.59
HOXD3-201ENST00000249440 PPP2R2CQ9Y2T4 447 aa18.71■□□□□ 0.59
HOXD3-201ENST00000249440 FAM205CA6NFA0 338 aa18.71■□□□□ 0.58
HOXD3-201ENST00000249440 ERCC6LQ2NKX8 1250 aa18.71■□□□□ 0.58
HOXD3-201ENST00000249440 EARS2Q5JPH6 523 aaKnown RBP18.71■□□□□ 0.58
HOXD3-201ENST00000249440 EPSTI1Q96J88 318 aa18.71■□□□□ 0.58
HOXD3-201ENST00000249440 SAMSN1Q9NSI8 373 aaKnown RBP18.71■□□□□ 0.58
HOXD3-201ENST00000249440 hCG_1642624A0A1W2PR95 340 aa18.7■□□□□ 0.58
HOXD3-201ENST00000249440 WTIPA6NIX2 430 aaPredicted RBP18.7■□□□□ 0.58
HOXD3-201ENST00000249440 NR1I3Q14994 352 aa18.7■□□□□ 0.58
HOXD3-201ENST00000249440 TC2NQ8N9U0 490 aa18.7■□□□□ 0.58
HOXD3-201ENST00000249440 SCN7AQ01118 1682 aa18.7■□□□□ 0.58
HOXD3-201ENST00000249440 CASZ1Q86V15 1759 aa18.7■□□□□ 0.58
HOXD3-201ENST00000249440 USP17L12C9JPN9 530 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 USP17L21D6R901 530 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 ONECUT3O60422 494 aaPredicted RBP18.69■□□□□ 0.58
HOXD3-201ENST00000249440 TMTC3Q6ZXV5 915 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 SH3RF1Q7Z6J0 888 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 CTCFLQ8NI51 663 aaPredicted RBP18.69■□□□□ 0.58
HOXD3-201ENST00000249440 SYMPKQ92797 1274 aaKnown RBP18.69■□□□□ 0.58
HOXD3-201ENST00000249440 GSDMAQ96QA5 445 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 MED15Q96RN5 788 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 NPHP1O15259 732 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 GTF2E1P29083 439 aaPredicted RBP18.69■□□□□ 0.58
HOXD3-201ENST00000249440 AFMP43652 599 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 C3orf67Q6ZVT6 689 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 ZNF384Q8TF68 577 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 PAGE5Q96GU1 130 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 PKNOX2Q96KN3 472 aa18.69■□□□□ 0.58
HOXD3-201ENST00000249440 COL5A3P25940 1745 aaPredicted RBP18.69■□□□□ 0.58
HOXD3-201ENST00000249440 MYH13Q9UKX3 1938 aa18.68■□□□□ 0.58
HOXD3-201ENST00000249440 A0A087X0B3 334 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms