RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 DGKHQ86XP1 1220 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 ZNF579Q8NAF0 562 aaKnown RBP22.04■■□□□ 1.12
YBX3-201ENST00000228251 TRIM5Q9C035 493 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 TCP11L1Q9NUJ3 509 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 SPTLC3Q9NUV7 552 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 TAOK2Q9UL54 1235 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 GAKO14976 1311 aa22.04■■□□□ 1.12
YBX3-201ENST00000228251 SNED1Q8TER0 1413 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 TSPY2A6NKD2 308 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 GOLGA6L6A8MZA4 724 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 USP5P45974 858 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 AKAP17AQ02040 695 aaKnown RBP22.03■■□□□ 1.12
YBX3-201ENST00000228251 SPC24Q8NBT2 197 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 DYNLL2Q96FJ2 89 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 MRFAP1L1Q96HT8 127 aa22.03■■□□□ 1.12
YBX3-201ENST00000228251 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.02■■□□□ 1.12
YBX3-201ENST00000228251 GOLGA6L19H0YKK7 550 aa22.02■■□□□ 1.12
YBX3-201ENST00000228251 XBP1P17861 261 aa22.02■■□□□ 1.12
YBX3-201ENST00000228251 HMGB2P26583 209 aaKnown RBP22.02■■□□□ 1.12
YBX3-201ENST00000228251 GRIN1Q05586 938 aa22.02■■□□□ 1.12
YBX3-201ENST00000228251 ZNF827Q17R98 1081 aa22.02■■□□□ 1.12
YBX3-201ENST00000228251 EARS2Q5JPH6 523 aaKnown RBP22.02■■□□□ 1.12
YBX3-201ENST00000228251 AKT1S1Q96B36 256 aa22.02■■□□□ 1.12
YBX3-201ENST00000228251 NAT10Q9H0A0 1025 aaKnown RBP22.02■■□□□ 1.12
YBX3-201ENST00000228251 hCG_1642624A0A1W2PR95 340 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 FAM205CA6NFA0 338 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 KRT2P35908 639 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 RHBDL3P58872 404 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 TFAP4Q01664 338 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 METTL16Q86W50 562 aaKnown RBP22.02■■□□□ 1.11
YBX3-201ENST00000228251 SP8Q8IXZ3 490 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 CTCFLQ8NI51 663 aaPredicted RBP22.02■■□□□ 1.11
YBX3-201ENST00000228251 TGFBRAP1Q8WUH2 860 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 KCNH3Q9ULD8 1083 aa22.02■■□□□ 1.11
YBX3-201ENST00000228251 SRPRBQ9Y5M8 271 aaKnown RBP22.02■■□□□ 1.11
YBX3-201ENST00000228251 MDM2Q00987 491 aaPredicted RBP22.01■■□□□ 1.11
YBX3-201ENST00000228251 KRBA2Q6ZNG9 492 aa22.01■■□□□ 1.11
YBX3-201ENST00000228251 AOPEPQ8N6M6 819 aa22.01■■□□□ 1.11
YBX3-201ENST00000228251 KIAA1524Q8TCG1 905 aa22.01■■□□□ 1.11
YBX3-201ENST00000228251 CABP5Q9NP86 173 aa22.01■■□□□ 1.11
YBX3-201ENST00000228251 BTDP43251 543 aa22■■□□□ 1.11
YBX3-201ENST00000228251 PLCD1P51178 756 aa22■■□□□ 1.11
YBX3-201ENST00000228251 TERF1P54274 439 aa22■■□□□ 1.11
YBX3-201ENST00000228251 NCAPHQ15003 741 aa22■■□□□ 1.11
YBX3-201ENST00000228251 LONRF3Q496Y0 759 aa22■■□□□ 1.11
YBX3-201ENST00000228251 PLSCR1O15162 318 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 RASA1P20936 1047 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 PTGS1P23219 599 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 PFKFB3Q16875 520 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 TBC1D22AQ8WUA7 517 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 NAP1L5Q96NT1 182 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 PYCARDQ9ULZ3 195 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 CEP131Q9UPN4 1083 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 ATP6V0A2Q9Y487 856 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 RGPD3A6NKT7 1758 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 RGPD4Q7Z3J3 1758 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 PPEF1O14829 653 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 SCG2P13521 617 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 GRM4Q14833 912 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 NOLC1Q14978 699 aaKnown RBP eCLIP21.99■■□□□ 1.11
YBX3-201ENST00000228251 CCDC178Q5BJE1 867 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 FOXP4Q8IVH2 680 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 NOL10Q9BSC4 688 aaKnown RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 NRBP1Q9UHY1 535 aa21.99■■□□□ 1.11
YBX3-201ENST00000228251 TNS1Q9HBL0 1735 aaKnown RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 ZNF646O15015 1829 aaPredicted RBP21.99■■□□□ 1.11
YBX3-201ENST00000228251 BECN2A8MW95 431 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 WNT7AO00755 349 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 VEGFAP15692 232 aaPredicted RBP21.98■■□□□ 1.11
YBX3-201ENST00000228251 SLC4A8Q2Y0W8 1093 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 MFSD14BQ5SR56 506 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 CCDC186Q7Z3E2 898 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 COL23A1Q86Y22 540 aaPredicted RBP21.98■■□□□ 1.11
YBX3-201ENST00000228251 MAPKAPK5Q8IW41 473 aa21.98■■□□□ 1.11
YBX3-201ENST00000228251 FLT1P17948 1338 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 TRIM75PA6NK02 468 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 SRGNP10124 158 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 KIF5BP33176 963 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 SLC35G1Q2M3R5 365 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 C16orf86Q6ZW13 317 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 SLC44A5Q8NCS7 719 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 PNMA1Q8ND90 353 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 KAT14Q9H8E8 782 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 PLCG2P16885 1265 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 PNOCQ13519 176 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 CCDC144BQ3MJ40 725 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 NOM1Q5C9Z4 860 aaKnown RBP21.97■■□□□ 1.11
YBX3-201ENST00000228251 NLGN1Q8N2Q7 840 aa21.97■■□□□ 1.11
YBX3-201ENST00000228251 ADAMTSL1Q8N6G6 1762 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 USP17L3A6NCW0 530 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 USP17L4A6NCW7 530 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 BIN1O00499 593 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 IKBKBO14920 756 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 NOVP48745 357 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 SPECC1Q5M775 1068 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 USP17L1Q7RTZ2 530 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 AMOTL1Q8IY63 956 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 HSD3B7Q9H2F3 369 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 CLIP2Q9UDT6 1046 aa21.96■■□□□ 1.11
YBX3-201ENST00000228251 MAD2L2Q9UI95 211 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms