RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RTEL1Q9NZ71 1219 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 MYH8P13535 1937 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 UBE2Q2LH0YL09 131 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 MYSM1Q5VVJ2 828 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 LARGE2Q8N3Y3 721 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 PNMA1Q8ND90 353 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 SWAP70Q9UH65 585 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 MRE11P49959 708 aa17.24■□□□□ 0.35
CCDC47-201ENST00000225726 RBM5P52756 815 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC47-201ENST00000225726 ZNF277Q9NRM2 450 aaPredicted RBP17.24■□□□□ 0.35
CCDC47-201ENST00000225726 U2AF2P26368 475 aaKnown RBP eCLIP17.23■□□□□ 0.355e-7■■■■□ 21
CCDC47-201ENST00000225726 CNTNAP5Q8WYK1 1306 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 MMP1P03956 469 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 HLA-DOAP06340 250 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 GNL2Q13823 731 aaKnown RBP17.23■□□□□ 0.35
CCDC47-201ENST00000225726 TPRNQ4KMQ1 711 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 ARID3AQ99856 593 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 IDI2Q9BXS1 227 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 COL4A5P29400 1685 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 NPM3O75607 178 aaKnown RBP17.23■□□□□ 0.35
CCDC47-201ENST00000225726 LETM1O95202 739 aaPredicted RBP17.23■□□□□ 0.35
CCDC47-201ENST00000225726 CEBPZQ03701 1054 aaKnown RBP17.23■□□□□ 0.35
CCDC47-201ENST00000225726 LRSAM1Q6UWE0 723 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 PGBD1Q96JS3 809 aa17.23■□□□□ 0.35
CCDC47-201ENST00000225726 FTOQ9C0B1 505 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC47-201ENST00000225726 SYCE3A1L190 88 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 GRM4Q14833 912 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 R3HDM1Q15032 1099 aaKnown RBP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 SAFBQ15424 915 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 DALRD3Q5D0E6 543 aaKnown RBP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 RSBN1LQ6PCB5 846 aaPredicted RBP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 GRPEL1Q9HAV7 217 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 POLR3EQ9NVU0 708 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 SERPINB13Q9UIV8 391 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 XBP1P17861 261 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 PKN1Q16512 942 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 SRBD1Q8N5C6 995 aaKnown RBP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 TMEM47Q9BQJ4 181 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.22■□□□□ 0.35
CCDC47-201ENST00000225726 EHD4Q9H223 541 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 PCDHAC2Q9Y5I4 1007 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 NOVP48745 357 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 NFIAQ12857 509 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 KLHL34Q8N239 644 aa17.22■□□□□ 0.35
CCDC47-201ENST00000225726 YEATS4O95619 227 aa17.21■□□□□ 0.35
CCDC47-201ENST00000225726 VIL1P09327 827 aaKnown RBP17.21■□□□□ 0.35
CCDC47-201ENST00000225726 NASPP49321 788 aaPredicted RBP17.21■□□□□ 0.35
CCDC47-201ENST00000225726 DHX36Q9H2U1 1008 aaKnown RBP17.21■□□□□ 0.35
CCDC47-201ENST00000225726 FER1L6Q2WGJ9 1857 aa17.21■□□□□ 0.35
CCDC47-201ENST00000225726 GNAQP50148 359 aa17.21■□□□□ 0.35
CCDC47-201ENST00000225726 TAOK2Q9UL54 1235 aa17.21■□□□□ 0.35
CCDC47-201ENST00000225726 V9GY48 417 aaPredicted RBP17.21■□□□□ 0.35
CCDC47-201ENST00000225726 CFAP100Q494V2 611 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 FOXP1Q9H334 677 aaPredicted RBP17.2■□□□□ 0.34
CCDC47-201ENST00000225726 STX8Q9UNK0 236 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 SIPA1L1O43166 1804 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 NIM1KQ8IY84 436 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 FAM198AQ9UFP1 575 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 PSMD14O00487 310 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 TOP1P11387 765 aaKnown RBP17.2■□□□□ 0.34
CCDC47-201ENST00000225726 LINC00301Q8NCQ3 95 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 BICD2Q8TD16 824 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 SGIP1Q9BQI5 828 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 KCNJ14Q9UNX9 436 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 CLIC4Q9Y696 253 aa17.2■□□□□ 0.34
CCDC47-201ENST00000225726 LIG1P18858 919 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 DIS3L2Q8IYB7 885 aaKnown RBP17.19■□□□□ 0.34
CCDC47-201ENST00000225726 KCNG4Q8TDN1 519 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 CEP95Q96GE4 821 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 MAD2L2Q9UI95 211 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 ZNRF3Q9ULT6 936 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 CD2APQ9Y5K6 639 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 COL2A1P02458 1487 aaPredicted RBP17.19■□□□□ 0.34
CCDC47-201ENST00000225726 STK38Q15208 465 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 ANO1Q5XXA6 986 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 NOSTRINQ8IVI9 506 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 GMLQ99445 158 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 GREB1LQ9C091 1923 aaPredicted RBP17.19■□□□□ 0.34
CCDC47-201ENST00000225726 IGKV6D-41A0A0C4DH26 115 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 RAD17O75943 681 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 XRCC6P12956 609 aaKnown RBP eCLIP17.19■□□□□ 0.34
CCDC47-201ENST00000225726 SHMT1P34896 483 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 ZFPM1Q8IX07 1006 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 HDAC9Q9UKV0 1011 aa17.19■□□□□ 0.34
CCDC47-201ENST00000225726 LZTS2Q9BRK4 669 aa17.18■□□□□ 0.34
CCDC47-201ENST00000225726 PHF20Q9BVI0 1012 aa17.18■□□□□ 0.34
CCDC47-201ENST00000225726 DDX19AQ9NUU7 478 aaKnown RBP17.18■□□□□ 0.34
CCDC47-201ENST00000225726 AKR1B1P15121 316 aa17.18■□□□□ 0.34
CCDC47-201ENST00000225726 CACNB3P54284 484 aa17.18■□□□□ 0.34
CCDC47-201ENST00000225726 UPF1Q92900 1129 aaKnown RBP eCLIP17.18■□□□□ 0.343e-11■□□□□ 9.7
CCDC47-201ENST00000225726 ENTPD3O75355 529 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 BTBD18B2RXH4 712 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 ME1P48163 572 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 PFKFB3Q16875 520 aaPredicted RBP17.17■□□□□ 0.34
CCDC47-201ENST00000225726 TAOK3Q9H2K8 898 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 TDRD3Q9H7E2 651 aaKnown RBP17.17■□□□□ 0.34
CCDC47-201ENST00000225726 MTMR4Q9NYA4 1195 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 VPS54Q9P1Q0 977 aa17.17■□□□□ 0.34
CCDC47-201ENST00000225726 PALM3A6NDB9 673 aaPredicted RBP17.17■□□□□ 0.34
CCDC47-201ENST00000225726 SPTLC2O15270 562 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms