RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ERVK-24P63145 666 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 ALX1Q15699 326 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 CDKAL1Q5VV42 579 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 SPATA1Q5VX52 437 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 MFSD6Q6ZSS7 791 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 RASGRP2Q7LDG7 609 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 TRIML1Q8N9V2 468 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 ZNF579Q8NAF0 562 aaKnown RBP14.1□□□□□ -0.15
NUP88-201ENST00000225696 SYMPKQ92797 1274 aaKnown RBP14.1□□□□□ -0.15
NUP88-201ENST00000225696 DACH1Q9UI36 760 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 TBC1D2BQ9UPU7 963 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 MAP3K15Q6ZN16 1313 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 SYNRGQ9UMZ2 1314 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 ANKRD18BA2A2Z9 1011 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 VSNL1P62760 191 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 WTAPQ15007 396 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 MUM1L1Q5H9M0 696 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 PPFIBP1Q86W92 1011 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 TRIM22Q8IYM9 498 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 MIGA1Q8NAN2 632 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 SPATA5Q8NB90 893 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 FANCBQ8NB91 859 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 VPS18Q9P253 973 aa14.1□□□□□ -0.15
NUP88-201ENST00000225696 IRS4O14654 1257 aaPredicted RBP14.09□□□□□ -0.15
NUP88-201ENST00000225696 KIF5CO60282 957 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 BRD3Q15059 726 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 KIF4BQ2VIQ3 1234 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 FOXR1Q6PIV2 292 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 KIF6Q6ZMV9 814 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 NOA1Q8NC60 698 aaKnown RBP14.09□□□□□ -0.15
NUP88-201ENST00000225696 BLZF1Q9H2G9 400 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 PARP4Q9UKK3 1724 aaKnown RBP14.09□□□□□ -0.15
NUP88-201ENST00000225696 TNS2Q63HR2 1409 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 DEXIO95424 95 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 NKX1-1Q15270 411 aaPredicted RBP14.09□□□□□ -0.15
NUP88-201ENST00000225696 GIGYF2Q6Y7W6 1299 aaKnown RBP14.09□□□□□ -0.15
NUP88-201ENST00000225696 SH3RF1Q7Z6J0 888 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 WASF1Q92558 559 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 TRIM10Q9UDY6 481 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 RAB21Q9UL25 225 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 L1RE1Q9UN81 338 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 TFR2Q9UP52 801 aa14.09□□□□□ -0.15
NUP88-201ENST00000225696 TNS3Q68CZ2 1445 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 ADAMTS3O15072 1205 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 ARHGAP25P42331 645 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 PKN1Q16512 942 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 ZNF654Q8IZM8 581 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 MSANTD4Q8NCY6 345 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 SLC4A4Q9Y6R1 1079 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 SPATA31A3Q5VYP0 1347 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 BAZ2BQ9UIF8 2168 aaKnown RBP14.08□□□□□ -0.16
NUP88-201ENST00000225696 MYH8P13535 1937 aa14.08□□□□□ -0.16
NUP88-201ENST00000225696 PHACTR2O75167 634 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 FGFR2P21802 821 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 USP5P45974 858 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 TDO2P48775 406 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 ZNF174Q15697 407 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 NCAPH2Q6IBW4 605 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 ADGRA1Q86SQ6 560 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 EXOC4Q96A65 974 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 MTRQ99707 1265 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 TRIM34Q9BYJ4 488 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 TRMT112Q9UI30 125 aaKnown RBP14.07□□□□□ -0.16
NUP88-201ENST00000225696 CTNND2Q9UQB3 1225 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 FAN1Q9Y2M0 1017 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 KRT31Q15323 416 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 JAKMIP3Q5VZ66 844 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 KANK3Q6NY19 840 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 STAG1Q8WVM7 1258 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 HNRNPLLQ8WVV9 542 aaKnown RBP14.07□□□□□ -0.16
NUP88-201ENST00000225696 KRT23Q9C075 422 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 VPS16Q9H269 839 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 AATFQ9NY61 560 aaKnown RBP eCLIP14.07□□□□□ -0.16
NUP88-201ENST00000225696 WDR17Q8IZU2 1322 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 NID2Q14112 1375 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 CHD4Q14839 1912 aa14.07□□□□□ -0.16
NUP88-201ENST00000225696 CTAGE9A4FU28 777 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 TRIM75PA6NK02 468 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 PLEKHA8P1O95397 391 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 BCAMP50895 628 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 GPS2Q13227 327 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 SDR42E1Q8WUS8 393 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 PIGBQ92521 554 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 CHP1Q99653 195 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 SLF1Q9BQI6 1058 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 CNNM2Q9H8M5 875 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 PRDM11Q9NQV5 511 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 MAPK8IP1Q9UQF2 711 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 XDHP47989 1333 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 CDHR2Q9BYE9 1310 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 PAPPAQ13219 1627 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 LRRIQ3A6PVS8 624 aaPredicted RBP14.06□□□□□ -0.16
NUP88-201ENST00000225696 PUM3Q15397 648 aaKnown RBP14.06□□□□□ -0.16
NUP88-201ENST00000225696 HDXQ7Z353 690 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 CEP112Q8N8E3 955 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 LPIN2Q92539 896 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 SLC4A9Q96Q91 983 aa14.06□□□□□ -0.16
NUP88-201ENST00000225696 NAA15Q9BXJ9 866 aaKnown RBP14.06□□□□□ -0.16
NUP88-201ENST00000225696 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
NUP88-201ENST00000225696 IQSEC3Q9UPP2 1182 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms