RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Dnah2P0C6F1 4456 aa7.32□□□□□ -1.24
Ccdc88b-201ENSMUST00000113440 Dync1h1Q9JHU4 4644 aaKnown RBP7.28□□□□□ -1.24
Ccdc88b-201ENSMUST00000113440 4933428G20RikQ9D3X4 101 aa7.21□□□□□ -1.26
Ccdc88b-201ENSMUST00000113440 Gm19668J3QMD1 248 aa7.2□□□□□ -1.26
Ccdc88b-201ENSMUST00000113440 Ryr3A2AGL3 4863 aa7.15□□□□□ -1.26
Ccdc88b-201ENSMUST00000113440 SacsQ9JLC8 4582 aa7.15□□□□□ -1.26
Ccdc88b-201ENSMUST00000113440 Dnah7cA0A087WR13 4024 aa7.15□□□□□ -1.26
Ccdc88b-201ENSMUST00000113440 Hectd4E9Q2E4 4418 aa7.13□□□□□ -1.27
Ccdc88b-201ENSMUST00000113440 Ryr1E9PZQ0 5035 aa7.1□□□□□ -1.27
Ccdc88b-201ENSMUST00000113440 Mycbp2Q7TPH6 4711 aa7.05□□□□□ -1.28
Ccdc88b-201ENSMUST00000113440 Fat1A0A1L1SQU7 4645 aa7.04□□□□□ -1.28
Ccdc88b-201ENSMUST00000113440 Dnah7aE9Q0T8 4024 aa7.04□□□□□ -1.28
Ccdc88b-201ENSMUST00000113440 Lrp1Q91ZX7 4545 aaKnown RBP7.02□□□□□ -1.28
Ccdc88b-201ENSMUST00000113440 Fras1Q80T14 4010 aa7□□□□□ -1.29
Ccdc88b-201ENSMUST00000113440 Pkd1O08852 4293 aa6.98□□□□□ -1.29
Ccdc88b-201ENSMUST00000113440 Krtap1-5A2A590 122 aa6.95□□□□□ -1.3
Ccdc88b-201ENSMUST00000113440 Fat3Q8BNA6 4555 aa6.87□□□□□ -1.31
Ccdc88b-201ENSMUST00000113440 Vps13bQ80TY5 3993 aa6.86□□□□□ -1.31
Ccdc88b-201ENSMUST00000113440 Krtap7-1Q9D3I6 87 aa6.84□□□□□ -1.31
Ccdc88b-201ENSMUST00000113440 Sprr2a3Q4KL71 83 aa6.81□□□□□ -1.32
Ccdc88b-201ENSMUST00000113440 Sprr2a1Q9CQK8 83 aa6.81□□□□□ -1.32
Ccdc88b-201ENSMUST00000113440 Fat2Q5F226 4351 aa6.8□□□□□ -1.32
Ccdc88b-201ENSMUST00000113440 Gm19402J3QJV4 266 aa6.77□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 HydinQ80W93 5154 aa6.76□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 Gm18596A0A1W2P860 280 aa6.76□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 Kiaa1109A2AAE1 5005 aa6.75□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 LorP18165 486 aa6.73□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 Herc2Q4U2R1 4836 aa6.73□□□□□ -1.33
Ccdc88b-201ENSMUST00000113440 Krtap1-4Q3V2D6 188 aa6.71□□□□□ -1.34
Ccdc88b-201ENSMUST00000113440 Ryr2E9Q401 4966 aaKnown RBP6.67□□□□□ -1.34
Ccdc88b-201ENSMUST00000113440 Lrp2A2ARV4 4660 aa6.66□□□□□ -1.34
Ccdc88b-201ENSMUST00000113440 Dnah8Q91XQ0 4731 aa6.65□□□□□ -1.34
Ccdc88b-201ENSMUST00000113440 Krtap19-9aF8WH65 55 aa6.64□□□□□ -1.35
Ccdc88b-201ENSMUST00000113440 Krtap16-3Q8C1I6 86 aa6.52□□□□□ -1.36
Ccdc88b-201ENSMUST00000113440 Lce1mQ9CR91 182 aa6.51□□□□□ -1.37
Ccdc88b-201ENSMUST00000113440 Krtap12-1Q9Z287 130 aa6.5□□□□□ -1.37
Ccdc88b-201ENSMUST00000113440 Krtap19-3Q925H6 87 aa6.45□□□□□ -1.38
Ccdc88b-201ENSMUST00000113440 Abca13Q5SSE9 5034 aa6.45□□□□□ -1.38
Ccdc88b-201ENSMUST00000113440 Pkhd1l1Q80ZA4 4249 aa6.4□□□□□ -1.39
Ccdc88b-201ENSMUST00000113440 Krtap19-1Q925H2 87 aa6.38□□□□□ -1.39
Ccdc88b-201ENSMUST00000113440 Kmt2cQ8BRH4 4903 aa6.33□□□□□ -1.4
Ccdc88b-201ENSMUST00000113440 Dnhd1D3Z2X2 4750 aa6.32□□□□□ -1.4
Ccdc88b-201ENSMUST00000113440 Krtap19-9bQ99NG9 58 aa6.31□□□□□ -1.4
Ccdc88b-201ENSMUST00000113440 Gm6358A0A087WPH4 74 aa6.31□□□□□ -1.4
Ccdc88b-201ENSMUST00000113440 Pkhd1E9PZ36 4059 aa6.29□□□□□ -1.4
Ccdc88b-201ENSMUST00000113440 Krtap8-1O08633 61 aa6.25□□□□□ -1.41
Ccdc88b-201ENSMUST00000113440 Birc6O88738 4882 aa6.23□□□□□ -1.41
Ccdc88b-201ENSMUST00000113440 Prm1P02319 51 aa6.13□□□□□ -1.43
Ccdc88b-201ENSMUST00000113440 Krtap9-5A2A5X3 358 aa6.13□□□□□ -1.43
Ccdc88b-201ENSMUST00000113440 PcloQ9QYX7 5068 aa6.07□□□□□ -1.44
Ccdc88b-201ENSMUST00000113440 Krtap1-3A2A588 173 aa6.06□□□□□ -1.44
Ccdc88b-201ENSMUST00000113440 Lce1jD3YUU5 139 aa6.03□□□□□ -1.44
Ccdc88b-201ENSMUST00000113440 Gm7735D3YX18 52 aa5.98□□□□□ -1.45
Ccdc88b-201ENSMUST00000113440 Herc1E9PZP8 4859 aa5.96□□□□□ -1.46
Ccdc88b-201ENSMUST00000113440 Gm9789Q8BIG3 52 aa5.93□□□□□ -1.46
Ccdc88b-201ENSMUST00000113440 Sprr2kO70562 68 aa5.88□□□□□ -1.47
Ccdc88b-201ENSMUST00000113440 Krtap19-2Q925I0 141 aa5.86□□□□□ -1.47
Ccdc88b-201ENSMUST00000113440 Ubr4A2AN08 5180 aa5.84□□□□□ -1.47
Ccdc88b-201ENSMUST00000113440 2310046K23RikA0A0A6YVW6 87 aa5.82□□□□□ -1.48
Ccdc88b-201ENSMUST00000113440 Mt2P02798 61 aa5.78□□□□□ -1.48
Ccdc88b-201ENSMUST00000113440 4932415D10RikA0A1W2P6U8 4986 aa5.76□□□□□ -1.49
Ccdc88b-201ENSMUST00000113440 ZanO88799 5376 aa5.7□□□□□ -1.5
Ccdc88b-201ENSMUST00000113440 Krtap22-2J3QNX6 67 aa5.65□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Ush2AQ2QI47 5193 aa5.64□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Gm10272F7CZ33 110 aa5.64□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Fat4Q2PZL6 4981 aa5.64□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Gm10061D3Z714 54 aa5.64□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Mdn1A2ANY6 5589 aaKnown RBP5.62□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Sprr2gO70558 76 aa5.62□□□□□ -1.51
Ccdc88b-201ENSMUST00000113440 Gm10100J3QK64 120 aa5.58□□□□□ -1.52
Ccdc88b-201ENSMUST00000113440 Lce1iQ9D6P5 149 aa5.57□□□□□ -1.52
Ccdc88b-201ENSMUST00000113440 Lce3bQ9CQM7 98 aa5.57□□□□□ -1.52
Ccdc88b-201ENSMUST00000113440 Lce3cQ91V05 98 aa5.52□□□□□ -1.53
Ccdc88b-201ENSMUST00000113440 Krtap17-1A2A5X6 109 aa5.51□□□□□ -1.53
Ccdc88b-201ENSMUST00000113440 Lce1a2Q9D1K4 149 aa5.51□□□□□ -1.53
Ccdc88b-201ENSMUST00000113440 Gm11569B1AQB1 180 aa5.46□□□□□ -1.54
Ccdc88b-201ENSMUST00000113440 Gm10142J3KMP7 120 aa5.45□□□□□ -1.54
Ccdc88b-201ENSMUST00000113440 Hmcn2A2AJ76 5100 aa5.43□□□□□ -1.54
Ccdc88b-201ENSMUST00000113440 Rnf213E9Q555 5152 aaKnown RBP5.4□□□□□ -1.54
Ccdc88b-201ENSMUST00000113440 Gm38119A0A0A6YX29 146 aa5.38□□□□□ -1.55
Ccdc88b-201ENSMUST00000113440 Lce3eF8VQJ0 98 aa5.36□□□□□ -1.55
Ccdc88b-201ENSMUST00000113440 Lce3fQ6PAI4 98 aa5.36□□□□□ -1.55
Ccdc88b-201ENSMUST00000113440 Lce3dE9Q8V1 98 aa5.32□□□□□ -1.56
Ccdc88b-201ENSMUST00000113440 Krtap9-3Q3V2C1 136 aa5.27□□□□□ -1.57
Ccdc88b-201ENSMUST00000113440 Lce1hQ9D6R3 140 aa5.25□□□□□ -1.57
Ccdc88b-201ENSMUST00000113440 Lce3aQ497I5 98 aa5.23□□□□□ -1.57
Ccdc88b-201ENSMUST00000113440 Sprr2iO70560 76 aa5.13□□□□□ -1.59
Ccdc88b-201ENSMUST00000113440 Krtap4-6Q3V4B7 195 aa5.11□□□□□ -1.59
Ccdc88b-201ENSMUST00000113440 Krtap4-2B1AQ85 167 aa5.06□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Mt4P47945 62 aa5.06□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Muc5bE9Q5I3 4800 aa5.05□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Krtap19-4Q925H7 84 aa5.05□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Lce1bQ9D149 137 aa5.03□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Lce1fB9EJP6 147 aa5.03□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Lce1cQ9D1C5 147 aa5.03□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Lce1lQ9D1G7 135 aa5.03□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Lce1dQ9D731 133 aa5.03□□□□□ -1.6
Ccdc88b-201ENSMUST00000113440 Gm10024A0A0A0MQA4 119 aa5.02□□□□□ -1.61
Ccdc88b-201ENSMUST00000113440 Lce1gQ9D195 139 aa5.01□□□□□ -1.61
Ccdc88b-201ENSMUST00000113440 SspoQ8CG65 4998 aa4.95□□□□□ -1.62
Retrieved 100 of 22,080 RNA–protein pairs in 6.9 ms