RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Dnah8Q91XQ0 4731 aa6.7□□□□□ -1.34
Nup88-201ENSMUST00000035283 Gm17416Q30KP4 66 aa6.68□□□□□ -1.34
Nup88-201ENSMUST00000035283 Ryr2E9Q401 4966 aaKnown RBP6.66□□□□□ -1.34
Nup88-201ENSMUST00000035283 2210017I01RikA0A0A6YVV1 95 aa6.59□□□□□ -1.35
Nup88-201ENSMUST00000035283 Gm19426M0QWC7 77 aa6.57□□□□□ -1.36
Nup88-201ENSMUST00000035283 B930094E09RikQ8C4T2 136 aa6.55□□□□□ -1.36
Nup88-201ENSMUST00000035283 Ryr1E9PZQ0 5035 aa6.5□□□□□ -1.37
Nup88-201ENSMUST00000035283 2310057N15RikQ9D6T8 200 aa6.47□□□□□ -1.37
Nup88-201ENSMUST00000035283 Krtap13-1Q8K198 168 aa6.44□□□□□ -1.38
Nup88-201ENSMUST00000035283 BC029722A0A0N4SW31 51 aa6.43□□□□□ -1.38
Nup88-201ENSMUST00000035283 Krtap7-1Q9D3I6 87 aa6.42□□□□□ -1.38
Nup88-201ENSMUST00000035283 Ndufaf8A2AMZ4 74 aa6.41□□□□□ -1.38
Nup88-201ENSMUST00000035283 HydinQ80W93 5154 aa6.38□□□□□ -1.39
Nup88-201ENSMUST00000035283 Gm19402J3QJV4 266 aa6.38□□□□□ -1.39
Nup88-201ENSMUST00000035283 Prm2P07978 107 aa6.37□□□□□ -1.39
Nup88-201ENSMUST00000035283 Kiaa1109A2AAE1 5005 aa6.37□□□□□ -1.39
Nup88-201ENSMUST00000035283 Lrp2A2ARV4 4660 aa6.35□□□□□ -1.39
Nup88-201ENSMUST00000035283 Herc2Q4U2R1 4836 aa6.3□□□□□ -1.4
Nup88-201ENSMUST00000035283 Gm19668J3QMD1 248 aa6.28□□□□□ -1.4
Nup88-201ENSMUST00000035283 Dnhd1D3Z2X2 4750 aa6.26□□□□□ -1.41
Nup88-201ENSMUST00000035283 Gm17402F6Z0L5 76 aa6.24□□□□□ -1.41
Nup88-201ENSMUST00000035283 Krtap1-5A2A590 122 aa6.22□□□□□ -1.41
Nup88-201ENSMUST00000035283 Gm10318A0A1W2P728 225 aa6.19□□□□□ -1.42
Nup88-201ENSMUST00000035283 Fam229aB2KGE5 128 aa6.18□□□□□ -1.42
Nup88-201ENSMUST00000035283 Sprr2a3Q4KL71 83 aa6.15□□□□□ -1.43
Nup88-201ENSMUST00000035283 Sprr2a1Q9CQK8 83 aa6.15□□□□□ -1.43
Nup88-201ENSMUST00000035283 Spink7Q6IE32 76 aa6.13□□□□□ -1.43
Nup88-201ENSMUST00000035283 Gm40193A0A1B0GT39 78 aa6.13□□□□□ -1.43
Nup88-201ENSMUST00000035283 Crct1Q6PAI5 102 aa6.11□□□□□ -1.43
Nup88-201ENSMUST00000035283 PcloQ9QYX7 5068 aa6.11□□□□□ -1.43
Nup88-201ENSMUST00000035283 Birc6O88738 4882 aa6.1□□□□□ -1.43
Nup88-201ENSMUST00000035283 Sec61bQ9CQS8 96 aaKnown RBP6.1□□□□□ -1.43
Nup88-201ENSMUST00000035283 Krtap16-3Q8C1I6 86 aa6.06□□□□□ -1.44
Nup88-201ENSMUST00000035283 Krtap19-1Q925H2 87 aa5.92□□□□□ -1.46
Nup88-201ENSMUST00000035283 Camk2n1Q6QWF9 78 aa5.91□□□□□ -1.46
Nup88-201ENSMUST00000035283 Krtap19-3Q925H6 87 aa5.88□□□□□ -1.47
Nup88-201ENSMUST00000035283 Ubr4A2AN08 5180 aa5.86□□□□□ -1.47
Nup88-201ENSMUST00000035283 Gm9112A2AI92 75 aa5.85□□□□□ -1.47
Nup88-201ENSMUST00000035283 Krtap1-4Q3V2D6 188 aa5.84□□□□□ -1.48
Nup88-201ENSMUST00000035283 Herc1E9PZP8 4859 aa5.79□□□□□ -1.48
Nup88-201ENSMUST00000035283 ZanO88799 5376 aa5.79□□□□□ -1.48
Nup88-201ENSMUST00000035283 Fat4Q2PZL6 4981 aa5.76□□□□□ -1.49
Nup88-201ENSMUST00000035283 4932415D10RikA0A1W2P6U8 4986 aa5.75□□□□□ -1.49
Nup88-201ENSMUST00000035283 Lce1jD3YUU5 139 aa5.69□□□□□ -1.5
Nup88-201ENSMUST00000035283 Tnp1P10856 55 aa5.59□□□□□ -1.51
Nup88-201ENSMUST00000035283 Hmcn2A2AJ76 5100 aa5.53□□□□□ -1.52
Nup88-201ENSMUST00000035283 Krtap12-1Q9Z287 130 aa5.53□□□□□ -1.52
Nup88-201ENSMUST00000035283 Ush2AQ2QI47 5193 aa5.53□□□□□ -1.52
Nup88-201ENSMUST00000035283 Krtap19-9aF8WH65 55 aa5.51□□□□□ -1.53
Nup88-201ENSMUST00000035283 Krtap1-3A2A588 173 aa5.5□□□□□ -1.53
Nup88-201ENSMUST00000035283 Krtap17-1A2A5X6 109 aa5.47□□□□□ -1.53
Nup88-201ENSMUST00000035283 Rnf213E9Q555 5152 aaKnown RBP5.46□□□□□ -1.54
Nup88-201ENSMUST00000035283 LorP18165 486 aa5.45□□□□□ -1.54
Nup88-201ENSMUST00000035283 Krtap8-1O08633 61 aa5.36□□□□□ -1.55
Nup88-201ENSMUST00000035283 Lce1iQ9D6P5 149 aa5.32□□□□□ -1.56
Nup88-201ENSMUST00000035283 2310046K23RikA0A0A6YVW6 87 aa5.31□□□□□ -1.56
Nup88-201ENSMUST00000035283 Lce1mQ9CR91 182 aa5.3□□□□□ -1.56
Nup88-201ENSMUST00000035283 Lce1a2Q9D1K4 149 aa5.3□□□□□ -1.56
Nup88-201ENSMUST00000035283 Krtap9-3Q3V2C1 136 aa5.29□□□□□ -1.56
Nup88-201ENSMUST00000035283 Krtap19-9bQ99NG9 58 aa5.26□□□□□ -1.57
Nup88-201ENSMUST00000035283 Lce1hQ9D6R3 140 aa5.19□□□□□ -1.58
Nup88-201ENSMUST00000035283 Krtap19-2Q925I0 141 aa5.17□□□□□ -1.58
Nup88-201ENSMUST00000035283 Krtap9-5A2A5X3 358 aa5.15□□□□□ -1.59
Nup88-201ENSMUST00000035283 Gm9789Q8BIG3 52 aa5.12□□□□□ -1.59
Nup88-201ENSMUST00000035283 Gm18596A0A1W2P860 280 aa5.12□□□□□ -1.59
Nup88-201ENSMUST00000035283 SspoQ8CG65 4998 aa5.07□□□□□ -1.6
Nup88-201ENSMUST00000035283 A0A1Y7VJH8 109 aa5.04□□□□□ -1.6
Nup88-201ENSMUST00000035283 Gm7544A0A1Y7VJ58 118 aa5.01□□□□□ -1.61
Nup88-201ENSMUST00000035283 Lce1dQ9D731 133 aa5□□□□□ -1.61
Nup88-201ENSMUST00000035283 Gm7735D3YX18 52 aa4.95□□□□□ -1.62
Nup88-201ENSMUST00000035283 Prm1P02319 51 aa4.92□□□□□ -1.62
Nup88-201ENSMUST00000035283 Mt2P02798 61 aa4.88□□□□□ -1.63
Nup88-201ENSMUST00000035283 A0A1Y7VLE6 161 aa4.84□□□□□ -1.63
Nup88-201ENSMUST00000035283 Gm6358A0A087WPH4 74 aa4.83□□□□□ -1.64
Nup88-201ENSMUST00000035283 Krtap28-10A0A1Y7VP58 119 aa4.81□□□□□ -1.64
Nup88-201ENSMUST00000035283 Lce1eQ9D139 143 aa4.81□□□□□ -1.64
Nup88-201ENSMUST00000035283 Muc5bE9Q5I3 4800 aa4.77□□□□□ -1.65
Nup88-201ENSMUST00000035283 Sprr2gO70558 76 aa4.76□□□□□ -1.65
Nup88-201ENSMUST00000035283 Krtap31-1Q9D644 177 aa4.75□□□□□ -1.65
Nup88-201ENSMUST00000035283 Krtap31-2Q8CAY5 177 aa4.74□□□□□ -1.65
Nup88-201ENSMUST00000035283 Gm11938Q9D3H4 131 aa4.72□□□□□ -1.65
Nup88-201ENSMUST00000035283 A030005L19RikA0A1Y7VIU2 113 aa4.7□□□□□ -1.66
Nup88-201ENSMUST00000035283 Gm10061D3Z714 54 aa4.7□□□□□ -1.66
Nup88-201ENSMUST00000035283 4933428G20RikQ9D3X4 101 aa4.66□□□□□ -1.66
Nup88-201ENSMUST00000035283 Gm10272F7CZ33 110 aa4.65□□□□□ -1.67
Nup88-201ENSMUST00000035283 Sprr2dO70555 85 aa4.63□□□□□ -1.67
Nup88-201ENSMUST00000035283 A0A286YCP9 139 aa4.61□□□□□ -1.67
Nup88-201ENSMUST00000035283 Lce1cQ9D1C5 147 aa4.56□□□□□ -1.68
Nup88-201ENSMUST00000035283 Krtap22-2J3QNX6 67 aa4.53□□□□□ -1.68
Nup88-201ENSMUST00000035283 Mdn1A2ANY6 5589 aaKnown RBP4.51□□□□□ -1.69
Nup88-201ENSMUST00000035283 A030005K14RikA0A1Y7VNY1 122 aa4.49□□□□□ -1.69
Nup88-201ENSMUST00000035283 A030003K21RikA0A1Y7VIM3 128 aa4.44□□□□□ -1.7
Nup88-201ENSMUST00000035283 Gm6217A0A1Y7VJK9 128 aa4.44□□□□□ -1.7
Nup88-201ENSMUST00000035283 Gm11562A0PK51 136 aa4.41□□□□□ -1.7
Nup88-201ENSMUST00000035283 Lce1fB9EJP6 147 aa4.39□□□□□ -1.71
Nup88-201ENSMUST00000035283 Lce1a1Q9CQH5 143 aa4.39□□□□□ -1.71
Nup88-201ENSMUST00000035283 Gm10100J3QK64 120 aa4.37□□□□□ -1.71
Nup88-201ENSMUST00000035283 Lce3bQ9CQM7 98 aa4.33□□□□□ -1.72
Nup88-201ENSMUST00000035283 Gm11569B1AQB1 180 aa4.32□□□□□ -1.72
Nup88-201ENSMUST00000035283 Gm10142J3KMP7 120 aa4.28□□□□□ -1.72
Retrieved 100 of 22,080 RNA–protein pairs in 13.2 ms