RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	TUB3	P09734	445 aa	Known RBP	4.1	□□□□□ -1.75
VPS27	YNR006W	TUP1	P16649	713 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	PWP1	P21304	576 aa	Known RBP	4.1	□□□□□ -1.75
VPS27	YNR006W	CLB1	P24868	471 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	ERG6	P25087	383 aa	Known RBP	4.1	□□□□□ -1.75
VPS27	YNR006W	TSA1	P34760	196 aa	Known RBP	4.1	□□□□□ -1.75
VPS27	YNR006W	ALY1	P36117	915 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	EHT1	P38295	451 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	SIC1	P38634	284 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	RGI2	P40188	164 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	MET28	P40573	187 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	ECL1	P48235	211 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	SPO1	P53541	631 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	REC102	Q02721	264 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	YPL107W	Q02873	248 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	YAP6	Q03935	383 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	MCM21	Q06675	368 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	RXT3	Q07458	294 aa		4.1	□□□□□ -1.75
VPS27	YNR006W	RIX7	Q07844	837 aa	Known RBP	4.1	□□□□□ -1.75
VPS27	YNR006W	RPP2A	P05319	106 aa	Known RBP	4.09	□□□□□ -1.75
VPS27	YNR006W	REC107	P21651	314 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	CDC20	P26309	610 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	URA7	P28274	579 aa	Known RBP	4.09	□□□□□ -1.75
VPS27	YNR006W	YBL029W	P38201	376 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	SFB3	P38810	929 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	YHR218W	P38899	603 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	MSS4	P38994	779 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	THI6	P41835	540 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	ROK1	P45818	564 aa	Predicted RBP	4.09	□□□□□ -1.75
VPS27	YNR006W	ZAP1	P47043	880 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	NOP9	P47077	666 aa	Known RBP	4.09	□□□□□ -1.75
VPS27	YNR006W	GLO1	P50107	326 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	MUB1	Q03162	620 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	GYL1	Q04322	720 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	STP3	Q05937	343 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	NOP12	Q08208	459 aa	Known RBP	4.09	□□□□□ -1.75
VPS27	YNR006W	TMA16	Q08687	178 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	SPE4	Q12455	300 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	ECM3	Q99252	613 aa		4.09	□□□□□ -1.75
VPS27	YNR006W	CET1	O13297	549 aa	Predicted RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	YLR415C	O13578	112 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	ATP2	P00830	511 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	STF1	P01098	86 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	ERG20	P08524	352 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	RNR1	P21524	888 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	PRE2	P30656	287 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	MGM1	P32266	881 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	RPN2	P32565	945 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	UIP5	P36137	443 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	FTH1	P38310	465 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	JHD1	P40034	492 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	SKP2	P42843	763 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	FYV8	P46949	817 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	YBP2	P53169	641 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	SLU7	Q02775	382 aa	Known RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	RSF1	Q05043	376 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	ACK1	Q07622	623 aa	Predicted RBP	4.09	□□□□□ -1.76
VPS27	YNR006W	SKS1	Q12505	502 aa		4.09	□□□□□ -1.76
VPS27	YNR006W	STE12	P13574	688 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	POL4	P25615	582 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	TDP1	P38319	544 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	GND1	P38720	489 aa	Known RBP	4.08	□□□□□ -1.76
VPS27	YNR006W	EFM4	P40516	257 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	NAS2	P40555	220 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	VMA13	P41807	478 aa	Known RBP	4.08	□□□□□ -1.76
VPS27	YNR006W	ZIM17	P42844	174 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	YJL055W	P47044	245 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	TCB2	P48231	1178 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	COX18	P53239	316 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	SEC5	P89102	971 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	CDA2	Q06703	312 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
VPS27	YNR006W	CDC45	Q08032	650 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	NPC2	Q12408	173 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	RRP36	Q12481	300 aa	Predicted RBP	4.08	□□□□□ -1.76
VPS27	YNR006W	HRP1	Q99383	534 aa	Known RBP	4.08	□□□□□ -1.76
VPS27	YNR006W	YRF1-4	O13559	1382 aa		4.08	□□□□□ -1.76
VPS27	YNR006W	RPS13	P05756	151 aa	Known RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	LAS1	P36146	502 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	SIF2	P38262	535 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	RTS1	P38903	757 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	CCT6	P39079	546 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	ECM1	P39715	212 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	ARB1	P40024	610 aa	Known RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	GET2	P40056	285 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	SLZ1	P40167	298 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	SSU1	P41930	458 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
VPS27	YNR006W	OCA1	P50946	238 aa	Predicted RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	ARX1	Q03862	593 aa	Known RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	FMP45	Q07651	309 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	POM34	Q12445	299 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
VPS27	YNR006W	PRE8	P23639	250 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	APE3	P37302	537 aa	Known RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	CST26	P38226	397 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	RFC1	P38630	861 aa	Known RBP	4.07	□□□□□ -1.76
VPS27	YNR006W	PLB1	P39105	664 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	BUD16	P39988	312 aa		4.07	□□□□□ -1.76
VPS27	YNR006W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 68.1 ms