RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 SH3D19Q5HYK7 790 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 C20orf194Q5TEA3 1177 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 WDR18Q9BV38 432 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 TNPO2O14787 897 aaKnown RBP16.93■□□□□ 0.3
LINC00339-211ENST00000641009 IFIT2P09913 472 aaKnown RBP16.93■□□□□ 0.3
LINC00339-211ENST00000641009 ASCC2Q9H1I8 757 aaPredicted RBP16.93■□□□□ 0.3
LINC00339-211ENST00000641009 BIN2Q9UBW5 565 aaPredicted RBP16.93■□□□□ 0.3
LINC00339-211ENST00000641009 ZBTB21Q9ULJ3 1066 aa16.93■□□□□ 0.3
LINC00339-211ENST00000641009 FLT3LGP49771 235 aa16.92■□□□□ 0.3
LINC00339-211ENST00000641009 BACE1P56817 501 aa16.92■□□□□ 0.3
LINC00339-211ENST00000641009 TTF1Q15361 905 aaPredicted RBP16.92■□□□□ 0.3
LINC00339-211ENST00000641009 FAM110CQ1W6H9 321 aa16.92■□□□□ 0.3
LINC00339-211ENST00000641009 CERS3Q8IU89 383 aa16.92■□□□□ 0.3
LINC00339-211ENST00000641009 DNAJC2Q99543 621 aaKnown RBP16.92■□□□□ 0.3
LINC00339-211ENST00000641009 RIOK1Q9BRS2 568 aaKnown RBP16.92■□□□□ 0.3
LINC00339-211ENST00000641009 GOLIM4O00461 696 aa16.91■□□□□ 0.3
LINC00339-211ENST00000641009 RAB11FIP3O75154 756 aa16.91■□□□□ 0.3
LINC00339-211ENST00000641009 PABPC4Q13310 644 aaKnown RBP eCLIP16.91■□□□□ 0.3
LINC00339-211ENST00000641009 SLC9C2Q5TAH2 1124 aa16.91■□□□□ 0.3
LINC00339-211ENST00000641009 SLAIN1Q8ND83 568 aa16.91■□□□□ 0.3
LINC00339-211ENST00000641009 EDC3Q96F86 508 aaKnown RBP16.91■□□□□ 0.3
LINC00339-211ENST00000641009 MAGEB6P1A0A0J9YX57 407 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 ADCY3O60266 1144 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 GH2P01242 217 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 CCL5P13501 91 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 ELNP15502 786 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 PDE6AP16499 860 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 GCLCP48506 637 aaPredicted RBP16.9■□□□□ 0.3
LINC00339-211ENST00000641009 TMED8Q6PL24 325 aaPredicted RBP16.9■□□□□ 0.3
LINC00339-211ENST00000641009 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.9■□□□□ 0.3
LINC00339-211ENST00000641009 SHISA4Q96DD7 197 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 CHMP4BQ9H444 224 aaKnown RBP16.9■□□□□ 0.3
LINC00339-211ENST00000641009 GINM1Q9NU53 330 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 TMOD4Q9NZQ9 345 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 SERPINB13Q9UIV8 391 aa16.9■□□□□ 0.3
LINC00339-211ENST00000641009 USP17L10C9JJH3 530 aa16.89■□□□□ 0.29
LINC00339-211ENST00000641009 TATDN1Q6P1N9 297 aa16.89■□□□□ 0.29
LINC00339-211ENST00000641009 RNF208Q9H0X6 261 aa16.89■□□□□ 0.29
LINC00339-211ENST00000641009 TAOK2Q9UL54 1235 aa16.89■□□□□ 0.29
LINC00339-211ENST00000641009 ZNF532Q9HCE3 1301 aa16.89■□□□□ 0.29
LINC00339-211ENST00000641009 C19orf81C9J6K1 198 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 PLCD1P51178 756 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 UBXN2AP68543 259 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 IRX3P78415 501 aaPredicted RBP16.88■□□□□ 0.29
LINC00339-211ENST00000641009 PDE3AQ14432 1141 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 TTC6Q86TZ1 520 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 COA7Q96BR5 231 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 EHD4Q9H223 541 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 BOLA2Q9H3K6 86 aa16.88■□□□□ 0.29
LINC00339-211ENST00000641009 TCRBV5S4A2TA0A5A2 114 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 PEX10O60683 326 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 HOXA7P31268 230 aaPredicted RBP16.87■□□□□ 0.29
LINC00339-211ENST00000641009 EVX2Q03828 476 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 IRF5Q13568 498 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 SLFNL1Q499Z3 407 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 P2RX7Q99572 595 aaKnown RBP16.87■□□□□ 0.29
LINC00339-211ENST00000641009 UNC93B1Q9H1C4 597 aa16.87■□□□□ 0.29
LINC00339-211ENST00000641009 RANBP2P49792 3224 aaKnown RBP16.87■□□□□ 0.29
LINC00339-211ENST00000641009 INHAP05111 366 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 GJB1P08034 283 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 GJA8P48165 433 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 ZYXQ15942 572 aaKnown RBP16.86■□□□□ 0.29
LINC00339-211ENST00000641009 CERKLQ49MI3 558 aaPredicted RBP16.86■□□□□ 0.29
LINC00339-211ENST00000641009 LCORLQ8N3X6 602 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 PXYLP1Q8TE99 480 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 SDR42E1Q8WUS8 393 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 CRNKL1Q9BZJ0 848 aaKnown RBP16.86■□□□□ 0.29
LINC00339-211ENST00000641009 EMILIN3Q9NT22 766 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 PAG1Q9NWQ8 432 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 SMARCA5O60264 1052 aaPredicted RBP16.86■□□□□ 0.29
LINC00339-211ENST00000641009 POLR3DP05423 398 aaPredicted RBP16.86■□□□□ 0.29
LINC00339-211ENST00000641009 ATP5JP18859 108 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 SHMT1P34896 483 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 HERVK_113P62684 666 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 RAB3GAP1Q15042 981 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 NKX2-3Q8TAU0 364 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 MORF4L1Q9UBU8 362 aa16.86■□□□□ 0.29
LINC00339-211ENST00000641009 CHGBP05060 677 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 ABCB5Q2M3G0 1257 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 USP17L2Q6R6M4 530 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 FEZ1Q99689 392 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 HAUS7Q99871 368 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 LRRCC1Q9C099 1032 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 TXNRD2Q9NNW7 524 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 MCM9Q9NXL9 1143 aa16.85■□□□□ 0.29
LINC00339-211ENST00000641009 ADD2P35612 726 aa16.84■□□□□ 0.29
LINC00339-211ENST00000641009 U2AF1L4Q8WU68 220 aaKnown RBP16.84■□□□□ 0.29
LINC00339-211ENST00000641009 ARMT1Q9H993 441 aa16.84■□□□□ 0.29
LINC00339-211ENST00000641009 DCP1AQ9NPI6 582 aaPredicted RBP16.84■□□□□ 0.29
LINC00339-211ENST00000641009 GJD2Q9UKL4 321 aa16.84■□□□□ 0.29
LINC00339-211ENST00000641009 ALPK3Q96L96 1907 aa16.84■□□□□ 0.29
LINC00339-211ENST00000641009 CYP2D6P10635 497 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 GUCY1A2P33402 732 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 GABPAQ06546 454 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 ACER1Q8TDN7 264 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 CABP5Q9NP86 173 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 RBPJLQ9UBG7 517 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 RLFQ13129 1914 aa16.83■□□□□ 0.28
LINC00339-211ENST00000641009 PARP14Q460N5 1801 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 MBD4O95243 580 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms