RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 RHBDL3P58872 404 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 MAP3K12Q12852 859 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 MAP2K5Q13163 448 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 ATP2B3Q16720 1220 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 GJC2Q5T442 439 aaPredicted RBP18.14■□□□□ 0.49
CLN3-249ENST00000636685 MFSD14CQ5VZR4 134 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 ATG9AQ7Z3C6 839 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 SH3RF1Q7Z6J0 888 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 EDC3Q96F86 508 aaKnown RBP18.14■□□□□ 0.49
CLN3-249ENST00000636685 FAM163AQ96GL9 167 aaPredicted RBP18.14■□□□□ 0.49
CLN3-249ENST00000636685 TMOD4Q9NZQ9 345 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 ABCF2Q9UG63 623 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 NDUFB9Q9Y6M9 179 aa18.14■□□□□ 0.49
CLN3-249ENST00000636685 TRIM60Q495X7 471 aa18.13■□□□□ 0.49
CLN3-249ENST00000636685 SLC39A5Q6ZMH5 540 aa18.13■□□□□ 0.49
CLN3-249ENST00000636685 WDR18Q9BV38 432 aa18.13■□□□□ 0.49
CLN3-249ENST00000636685 CWC22Q9HCG8 908 aaKnown RBP18.13■□□□□ 0.49
CLN3-249ENST00000636685 PDLIM7Q9NR12 457 aa18.13■□□□□ 0.49
CLN3-249ENST00000636685 MROH7-TTC4A0A0A0MT08 1334 aa18.13■□□□□ 0.49
CLN3-249ENST00000636685 TRIM43BA6NCK2 446 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 SEMA3EO15041 775 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 SLF2Q8IX21 1173 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 ZGPATQ8N5A5 531 aaKnown RBP18.12■□□□□ 0.49
CLN3-249ENST00000636685 TRPV1Q8NER1 839 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 PPM1EQ8WY54 764 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 TRIM43Q96BQ3 446 aaPredicted RBP18.12■□□□□ 0.49
CLN3-249ENST00000636685 RNPC3Q96LT9 517 aaKnown RBP18.12■□□□□ 0.49
CLN3-249ENST00000636685 SIPA1L1O43166 1804 aa18.12■□□□□ 0.49
CLN3-249ENST00000636685 GPR75-ASB3A0A0A6YYF3 556 aa18.11■□□□□ 0.49
CLN3-249ENST00000636685 MSCO60682 206 aa18.11■□□□□ 0.49
CLN3-249ENST00000636685 NPM3O75607 178 aaKnown RBP18.11■□□□□ 0.49
CLN3-249ENST00000636685 EPHB4P54760 987 aa18.11■□□□□ 0.49
CLN3-249ENST00000636685 JAG1P78504 1218 aa18.11■□□□□ 0.49
CLN3-249ENST00000636685 ADAMTS19Q8TE59 1207 aa18.11■□□□□ 0.49
CLN3-249ENST00000636685 TCF20Q9UGU0 1960 aaKnown RBP18.1■□□□□ 0.49
CLN3-249ENST00000636685 ADORA1P30542 326 aa18.1■□□□□ 0.49
CLN3-249ENST00000636685 CYP2C19P33261 490 aa18.1■□□□□ 0.49
CLN3-249ENST00000636685 ZNF384Q8TF68 577 aa18.1■□□□□ 0.49
CLN3-249ENST00000636685 SIL1Q9H173 461 aa18.1■□□□□ 0.49
CLN3-249ENST00000636685 ITGB8P26012 769 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 ATP2B2Q01814 1243 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 MECOMQ03112 1051 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 RASGRF1Q13972 1273 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 SHROOM1Q2M3G4 852 aaPredicted RBP18.09■□□□□ 0.49
CLN3-249ENST00000636685 WDR78Q5VTH9 848 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 ANO1Q5XXA6 986 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 CCDC102BQ68D86 513 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 ATXN2LQ8WWM7 1075 aaKnown RBP18.09■□□□□ 0.49
CLN3-249ENST00000636685 ASB2Q96Q27 587 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 CEP126Q9P2H0 1117 aa18.09■□□□□ 0.49
CLN3-249ENST00000636685 SALL2Q9Y467 1007 aaPredicted RBP18.09■□□□□ 0.49
CLN3-249ENST00000636685 C19orf81C9J6K1 198 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 KBTBD13C9JR72 458 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 CNMDO75829 334 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 MYCNP04198 464 aaPredicted RBP18.08■□□□□ 0.48
CLN3-249ENST00000636685 DNAJB2P25686 324 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 SNX17Q15036 470 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 ARRDC4Q8NCT1 418 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 NPLOC4Q8TAT6 608 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 GTF3C2Q8WUA4 911 aaPredicted RBP18.08■□□□□ 0.48
CLN3-249ENST00000636685 UHRF1Q96T88 793 aaPredicted RBP18.08■□□□□ 0.48
CLN3-249ENST00000636685 ZNF576Q9H609 170 aa18.08■□□□□ 0.48
CLN3-249ENST00000636685 SLC15A5A6NIM6 579 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 USP17L10C9JJH3 530 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 GLRX3O76003 335 aaKnown RBP18.07■□□□□ 0.48
CLN3-249ENST00000636685 PTPREP23469 700 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 SPTY2D1Q68D10 685 aaPredicted RBP18.07■□□□□ 0.48
CLN3-249ENST00000636685 FERMT2Q96AC1 680 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 USP44Q9H0E7 712 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 THEGQ9P2T0 379 aa18.07■□□□□ 0.48
CLN3-249ENST00000636685 HERC5Q9UII4 1024 aaKnown RBP18.07■□□□□ 0.48
CLN3-249ENST00000636685 PLXNA1Q9UIW2 1896 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 ASNSP08243 561 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 CYBAP13498 195 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 ADCYAP1R1P41586 468 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 TLE2Q04725 743 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 CCDC184Q52MB2 194 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 NCBP3Q53F19 620 aaKnown RBP18.06■□□□□ 0.48
CLN3-249ENST00000636685 ERICH6Q7L0X2 663 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 WDR63Q8IWG1 891 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 EMILIN3Q9NT22 766 aa18.06■□□□□ 0.48
CLN3-249ENST00000636685 ZBTB22O15209 634 aa18.05■□□□□ 0.48
CLN3-249ENST00000636685 GDF11O95390 407 aa18.05■□□□□ 0.48
CLN3-249ENST00000636685 HOXC6P09630 235 aa18.05■□□□□ 0.48
CLN3-249ENST00000636685 RABGAP1Q9Y3P9 1069 aa18.05■□□□□ 0.48
CLN3-249ENST00000636685 SMCHD1A6NHR9 2005 aa18.05■□□□□ 0.48
CLN3-249ENST00000636685 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.04■□□□□ 0.48
CLN3-249ENST00000636685 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.04■□□□□ 0.48
CLN3-249ENST00000636685 CIAO1O76071 339 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 IGHA2P01877 340 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 CCNA1P78396 465 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 MRPS5P82675 430 aaKnown RBP18.04■□□□□ 0.48
CLN3-249ENST00000636685 GRB14Q14449 540 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 TEX11Q8IYF3 940 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 TIFAQ96CG3 184 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 GAS2L1Q99501 681 aaPredicted RBP18.04■□□□□ 0.48
CLN3-249ENST00000636685 DNAJC18Q9H819 358 aa18.04■□□□□ 0.48
CLN3-249ENST00000636685 PDS5AQ29RF7 1337 aaKnown RBP18.03■□□□□ 0.48
CLN3-249ENST00000636685 CCDC85BQ15834 202 aaPredicted RBP18.03■□□□□ 0.48
CLN3-249ENST00000636685 NECAB3Q96P71 396 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms