RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ANKLE2Q86XL3 938 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 MFSD2AQ8NA29 543 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 CCDC120Q96HB5 630 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 WNT10AQ9GZT5 417 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 CNTNAP4Q9C0A0 1308 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 ZNF865P0CJ78 1059 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-208ENST00000625916 CFPP27918 469 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 PTPN11Q06124 597 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-208ENST00000625916 WIPI1Q5MNZ9 446 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-208ENST00000625916 ZNF746Q6NUN9 644 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-208ENST00000625916 LETMD1Q6P1Q0 360 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 C22orf34Q6ZV56 151 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 HID1Q8IV36 788 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 ANKRD24Q8TF21 1146 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 FAM8A1Q9UBU6 413 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 WWC3Q9ULE0 1092 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 TTF2Q9UNY4 1162 aaKnown RBP5.84□□□□□ -1.47
SCN1A-208ENST00000625916 CAPN6Q9Y6Q1 641 aa5.84□□□□□ -1.47
SCN1A-208ENST00000625916 NFIBO00712 420 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 BRD1O95696 1058 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 USP17L7P0C7H9 530 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 LMNB1P20700 586 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 FMR1Q06787 632 aaKnown RBP eCLIP5.83□□□□□ -1.48
SCN1A-208ENST00000625916 NKG7Q16617 165 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 LRRC56Q8IYG6 542 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-208ENST00000625916 XAGE3Q8WTP9 111 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 UBE2FQ969M7 185 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 DIRC2Q96SL1 478 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 C12orf49Q9H741 205 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 C19orf73Q9NVV2 129 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 ZSWIM5Q9P217 1185 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 SNCAIPQ9Y6H5 919 aa5.83□□□□□ -1.48
SCN1A-208ENST00000625916 CYP7A1P22680 504 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 CAP2P40123 477 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-208ENST00000625916 SV2BQ7L1I2 683 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 THAP5Q7Z6K1 395 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 CILP2Q8IUL8 1156 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 FBXO15Q8NCQ5 510 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-208ENST00000625916 RIN3Q8TB24 985 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 ALPK1Q96QP1 1244 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 NSUN3Q9H649 340 aaKnown RBP5.82□□□□□ -1.48
SCN1A-208ENST00000625916 SLAMF8Q9P0V8 285 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 ST14Q9Y5Y6 855 aa5.82□□□□□ -1.48
SCN1A-208ENST00000625916 RAC2P15153 192 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 GRK4P32298 578 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 CDK8P49336 464 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 PRAMEF13Q5VWM6 474 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 TTBK2Q6IQ55 1244 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 GAL3ST3Q96A11 431 aa5.81□□□□□ -1.48
SCN1A-208ENST00000625916 SUPT5HO00267 1087 aaKnown RBP5.8□□□□□ -1.48
SCN1A-208ENST00000625916 CST3P01034 146 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-208ENST00000625916 C1QTNF9P0C862 333 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 ZSCAN22P10073 491 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-208ENST00000625916 KIR3DL1P43629 444 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 TTC6Q86TZ1 520 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 CDH24Q86UP0 819 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 ABHD4Q8TB40 342 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 COX4I2Q96KJ9 171 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 ASB16Q96NS5 453 aa5.8□□□□□ -1.48
SCN1A-208ENST00000625916 TMEM253P0C7T8 217 aa5.79□□□□□ -1.48
SCN1A-208ENST00000625916 LCNL1Q6ZST4 164 aa5.79□□□□□ -1.48
SCN1A-208ENST00000625916 C1QL4Q86Z23 238 aa5.79□□□□□ -1.48
SCN1A-208ENST00000625916 EPB41L4BQ9H329 900 aa5.79□□□□□ -1.48
SCN1A-208ENST00000625916 DCP1AQ9NPI6 582 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-208ENST00000625916 HK2P52789 917 aa5.78□□□□□ -1.48
SCN1A-208ENST00000625916 TNK2Q07912 1038 aa5.78□□□□□ -1.48
SCN1A-208ENST00000625916 CCDC85BQ15834 202 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-208ENST00000625916 SIAH1Q8IUQ4 282 aa5.78□□□□□ -1.48
SCN1A-208ENST00000625916 FRMD6Q96NE9 622 aa5.78□□□□□ -1.48
SCN1A-208ENST00000625916 DNAJC25-GNG10A0A024R161 153 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 NPIPB6E9PJ23 425 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 KRT1P04264 644 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 PGRP06401 933 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 LDHBP07195 334 aaKnown RBP5.77□□□□□ -1.49
SCN1A-208ENST00000625916 EIF4BP23588 611 aaKnown RBP5.77□□□□□ -1.49
SCN1A-208ENST00000625916 ETV3P41162 512 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 SEPT6Q14141 434 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 RALGPS1Q5JS13 557 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 TMPRSS7Q7RTY8 843 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 CREG2Q8IUH2 290 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 MYLIPQ8WY64 445 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 DPH2Q9BQC3 489 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-208ENST00000625916 KCNK12Q9HB15 430 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 TMEM59LQ9UK28 342 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 PCDHB5Q9Y5E4 795 aa5.77□□□□□ -1.49
SCN1A-208ENST00000625916 P4HBP07237 508 aaKnown RBP5.76□□□□□ -1.49
SCN1A-208ENST00000625916 RPS26P62854 115 aaKnown RBP5.76□□□□□ -1.49
SCN1A-208ENST00000625916 PIWIL2Q8TC59 973 aaKnown RBP5.76□□□□□ -1.49
SCN1A-208ENST00000625916 TJP2Q9UDY2 1190 aa5.76□□□□□ -1.49
SCN1A-208ENST00000625916 TACC3Q9Y6A5 838 aa5.76□□□□□ -1.49
SCN1A-208ENST00000625916 IVNS1ABPQ9Y6Y0 642 aa5.76□□□□□ -1.49
SCN1A-208ENST00000625916 TCAF2A6NFQ2 919 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 RBAK-RBAKDNI3L0D1 243 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 GFRA2O00451 464 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 ESR1P03372 595 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 GNA15P30679 374 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 ERVFC1P60507 584 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 PDE4BQ07343 736 aa5.75□□□□□ -1.49
SCN1A-208ENST00000625916 KCNA10Q16322 511 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms