RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PATL2C9JE40 543 aaKnown RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 CTNND1O60716 968 aaKnown RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 CHMLP26374 656 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 TDO2P48775 406 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 CTDSPL2Q05D32 466 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 CERS3Q8IU89 383 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 FOXP4Q8IVH2 680 aaPredicted RBP16.16■□□□□ 0.18
LINC00540-202ENST00000616974 FAM43AQ8N2R8 423 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 NBPF3Q9H094 633 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 HELLSQ9NRZ9 838 aa16.16■□□□□ 0.18
LINC00540-202ENST00000616974 AKR1B1P15121 316 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 HAND2P61296 217 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 TTC6Q86TZ1 520 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 HOOK2Q96ED9 719 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 EHD4Q9H223 541 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 DIAPH3Q9NSV4 1193 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 ZBTB21Q9ULJ3 1066 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 MYH4Q9Y623 1939 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 CCDC171Q6TFL3 1326 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 LAMA4Q16363 1823 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 FGAP02671 866 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 ZBTB48P10074 688 aaPredicted RBP16.15■□□□□ 0.18
LINC00540-202ENST00000616974 CDK8P49336 464 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 RNF186Q9NXI6 227 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 AFG3L2Q9Y4W6 797 aa16.15■□□□□ 0.18
LINC00540-202ENST00000616974 TBC1D8O95759 1140 aa16.14■□□□□ 0.17
LINC00540-202ENST00000616974 TAF6LQ9Y6J9 622 aa16.14■□□□□ 0.17
LINC00540-202ENST00000616974 CCL15-CCL14A0A0B4J2E2 113 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 CAP1Q01518 475 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 PTH1RQ03431 593 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 SPP2Q13103 211 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 PPIL2Q13356 520 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 SEPT2Q15019 361 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 CCL15Q16663 113 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 ACER1Q8TDN7 264 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 LOC285556D6RIA3 1793 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 PPATQ06203 517 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 RAB3GAP1Q15042 981 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 CERKLQ49MI3 558 aaPredicted RBP16.13■□□□□ 0.17
LINC00540-202ENST00000616974 C16orf86Q6ZW13 317 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.13■□□□□ 0.17
LINC00540-202ENST00000616974 TRIM34Q9BYJ4 488 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 NAPBQ9H115 298 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 PICK1Q9NRD5 415 aa16.13■□□□□ 0.17
LINC00540-202ENST00000616974 PEX10O60683 326 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 TM4SF4P48230 202 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 COL9A3Q14050 684 aaPredicted RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 ZYXQ15942 572 aaKnown RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 LRRFIP1Q32MZ4 808 aaKnown RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 TREML2Q5T2D2 321 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 IFNL1Q8IU54 200 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 ARPP21Q9UBL0 812 aaPredicted RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 KCNH4Q9UQ05 1017 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 A0A1W2PRG0 241 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 BTBD19C9JJ37 291 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 MPHOSPH10O00566 681 aaKnown RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 ECM2O94769 699 aaPredicted RBP16.12■□□□□ 0.17
LINC00540-202ENST00000616974 RASA1P20936 1047 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 LBX1P52954 281 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 HMGCS2P54868 508 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 PPARAQ07869 468 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 SBK1Q52WX2 424 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 KIAA1755Q5JYT7 1200 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 SIAH1Q8IUQ4 282 aa16.12■□□□□ 0.17
LINC00540-202ENST00000616974 UNCXA6NJT0 531 aa16.11■□□□□ 0.17
LINC00540-202ENST00000616974 GNAT2P19087 354 aa16.11■□□□□ 0.17
LINC00540-202ENST00000616974 MAP2K1Q02750 393 aaPredicted RBP16.11■□□□□ 0.17
LINC00540-202ENST00000616974 MTMR2Q13614 643 aa16.11■□□□□ 0.17
LINC00540-202ENST00000616974 ABCB5Q2M3G0 1257 aa16.11■□□□□ 0.17
LINC00540-202ENST00000616974 ROBO3Q96MS0 1386 aa16.11■□□□□ 0.17
LINC00540-202ENST00000616974 HSPA8P11142 646 aaKnown RBP16.1■□□□□ 0.17
LINC00540-202ENST00000616974 BMP2KLQ5H9B9 411 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 FAM47AQ5JRC9 791 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 GPAT2Q6NUI2 795 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 TBC1D10CQ8IV04 446 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 DNAH12Q6ZR08 3092 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 GIMAP6Q6P9H5 292 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 CHMP4CQ96CF2 233 aa16.1■□□□□ 0.17
LINC00540-202ENST00000616974 RLFQ13129 1914 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 A0A0G2JLL6 359 aaPredicted RBP16.09■□□□□ 0.17
LINC00540-202ENST00000616974 TESPA1A2RU30 521 aaPredicted RBP16.09■□□□□ 0.17
LINC00540-202ENST00000616974 MANSC4A6NHS7 340 aaPredicted RBP16.09■□□□□ 0.17
LINC00540-202ENST00000616974 NMT2O60551 498 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 CYP2C8P10632 490 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 CRHR2Q13324 411 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 SNAPC2Q13487 334 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 ERICH6BQ5W0A0 696 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 PRRT2Q7Z6L0 340 aaPredicted RBP16.09■□□□□ 0.17
LINC00540-202ENST00000616974 PARP14Q460N5 1801 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 USP17L5A8MUK1 530 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 SGSM2O43147 1006 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 ASNSP08243 561 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 GTF2A2P52657 109 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 GADL1Q6ZQY3 521 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 RASGRP2Q7LDG7 609 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 ZNF280CQ8ND82 737 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 DDRGK1Q96HY6 314 aa16.09■□□□□ 0.17
LINC00540-202ENST00000616974 SMCHD1A6NHR9 2005 aa16.08■□□□□ 0.16
LINC00540-202ENST00000616974 COL13A1Q5TAT6 717 aaPredicted RBP16.07■□□□□ 0.16
LINC00540-202ENST00000616974 NACAP1Q9BZK3 213 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms