RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FRMD4BQ9Y2L6 1034 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 ATP10AO60312 1499 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 CHMP2AO43633 222 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 STAMBPO95630 424 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 NUP58Q9BVL2 599 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC87Q9NVE4 849 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 MTUS1Q9ULD2 1270 aa15.66■□□□□ 0.1
CPSF1-212ENST00000616140 PLXNC1O60486 1568 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 CYP21A2P08686 494 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 CMA1P23946 247 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 ETF1P62495 437 aaKnown RBP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 PPP1R7Q15435 360 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 SLC9C1Q4G0N8 1177 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 C6orf163Q5TEZ5 329 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 KRT25Q7Z3Z0 450 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 ZBTB16Q05516 673 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 CUL4AQ13619 759 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 RBM26Q5T8P6 1007 aaKnown RBP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 HAUS3Q68CZ6 603 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 MAPKAPK5Q8IW41 473 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 FAM135BQ49AJ0 1406 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 GCC2Q8IWJ2 1684 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 BACH1O14867 736 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 PDIA3P30101 505 aaKnown RBP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 VWA3BQ502W6 1294 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 KRBA2Q6ZNG9 492 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 MRFAP1L1Q96HT8 127 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC114Q96M63 670 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 EYA3Q99504 573 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 NAP1L4Q99733 375 aaKnown RBP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 FAM207AQ9NSI2 230 aaPredicted RBP15.65■□□□□ 0.1
CPSF1-212ENST00000616140 FANCLQ9NW38 375 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 KDM6BO15054 1643 aa15.65■□□□□ 0.1
CPSF1-212ENST00000616140 NDUFAB1O14561 156 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 NDUFA8P51970 172 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 PPARAQ07869 468 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 SCRN1Q12765 414 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC6Q16204 474 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 CCDC84Q86UT8 332 aaPredicted RBP15.64■□□□□ 0.1
CPSF1-212ENST00000616140 IFNL3Q8IZI9 196 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 FANCBQ8NB91 859 aa15.64■□□□□ 0.1
CPSF1-212ENST00000616140 DPH6Q7L8W6 267 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 CCDC26Q8TAB7 109 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 AFAP1L1Q8TED9 768 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 TTC14Q96N46 770 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 NOX5Q96PH1 765 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 SPOPO43791 374 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 MSL1Q68DK7 614 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 CLIC6Q96NY7 704 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 KCNK9Q9NPC2 374 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 TBC1D7Q9P0N9 293 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 MYOM2P54296 1465 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 ZNF853P0CG23 659 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 GABPB1Q06547 395 aaPredicted RBP15.64■□□□□ 0.09
CPSF1-212ENST00000616140 SDR42E1Q8WUS8 393 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 RABEP2Q9H5N1 569 aa15.64■□□□□ 0.09
CPSF1-212ENST00000616140 KDM5AP29375 1690 aaKnown RBP15.63■□□□□ 0.09
CPSF1-212ENST00000616140 SLC1A4P43007 532 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 CTSWP56202 376 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 CABP7Q86V35 215 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 NELFCDQ8IXH7 590 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 REXO1Q8N1G1 1221 aaKnown RBP15.63■□□□□ 0.09
CPSF1-212ENST00000616140 GDAP1L1Q96MZ0 367 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 CCNL1Q9UK58 526 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-212ENST00000616140 GTF2A1P52655 376 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-212ENST00000616140 LRRC8AQ8IWT6 810 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 TRIM31Q9BZY9 425 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 NLRC4Q9NPP4 1024 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 SERPINA10Q9UK55 444 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 PYCARDQ9ULZ3 195 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 TNFAIP3P21580 790 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 ZNF589Q86UQ0 364 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-212ENST00000616140 AATKQ6ZMQ8 1374 aa15.63■□□□□ 0.09
CPSF1-212ENST00000616140 ERVV-2B6SEH9 535 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 GGA1Q9UJY5 639 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 TNKSO95271 1327 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 GOLGA6CA6NDK9 693 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 GOLGA6DP0CG33 693 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 RPS8P62241 208 aaKnown RBP15.62■□□□□ 0.09
CPSF1-212ENST00000616140 BIRC3Q13489 604 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 FMNL3Q8IVF7 1028 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 OR8K1Q8NGG5 319 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 GOLGA6AQ9NYA3 693 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 NRBP1Q9UHY1 535 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 KDM5CP41229 1560 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 TGFBRAP1Q8WUH2 860 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 MPHOSPH6Q99547 160 aaKnown RBP15.62■□□□□ 0.09
CPSF1-212ENST00000616140 PUS3Q9BZE2 481 aaKnown RBP15.62■□□□□ 0.09
CPSF1-212ENST00000616140 PCDHA5Q9Y5H7 936 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 COMMD10Q9Y6G5 202 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 CEP104O60308 925 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 ADCY7P51828 1080 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 MXRA7P84157 204 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 PPARDQ03181 441 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 CALCRLQ16602 461 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 RASSF4Q9H2L5 321 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 CLIC4Q9Y696 253 aa15.62■□□□□ 0.09
CPSF1-212ENST00000616140 KDM5DQ9BY66 1539 aa15.61■□□□□ 0.09
CPSF1-212ENST00000616140 GYG1P46976 350 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms