RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 HOOK3Q86VS8 718 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 SMC1BQ8NDV3 1235 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 HVCN1Q96D96 273 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 PPP1R13BQ96KQ4 1090 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 HELLSQ9NRZ9 838 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 AATFQ9NY61 560 aaKnown RBP eCLIP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 TDRD9Q8NDG6 1382 aaKnown RBP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 YTHDC2Q9H6S0 1430 aaKnown RBP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 BIRC5O15392 142 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 PDGFRBP09619 1106 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 PPP2R1AP30153 589 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 NLRP5P59047 1200 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 RIPK1Q13546 671 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 LBRQ14739 615 aaKnown RBP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 SLC7A5P1Q8MH63 180 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC155Q8N6L0 562 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 MPP4Q96JB8 637 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 PRAM1Q96QH2 718 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 NAT10Q9H0A0 1025 aaKnown RBP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC68Q9H2F9 335 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 SYNCQ9H7C4 482 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 DDX21Q9NR30 783 aaKnown RBP eCLIP9.95□□□□□ -0.82
COMMD3-215ENST00000602574 IMPACTQ9P2X3 320 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 ADAMTS8Q9UP79 889 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 MADDQ8WXG6 1647 aa9.95□□□□□ -0.82
COMMD3-215ENST00000602574 BOLA2-SMG1P6H3BVE0 249 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 WDR46O15213 610 aaKnown RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SART1O43290 800 aaKnown RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 IRAK1P51617 712 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 WHAMMP3Q1A5X7 153 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 PPP1R15BQ5SWA1 713 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 NANOGNBQ7Z5D8 188 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 USP48Q86UV5 1035 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 ARHGEF25Q86VW2 580 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 LMNTD2Q8IXW0 634 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC13Q8IYE1 715 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 FUKQ8N0W3 1084 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 RASSF8Q8NHQ8 419 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 WDR66Q8TBY9 1149 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TRPC4APQ8TEL6 797 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 NSMCE1Q8WV22 266 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 ZNF653Q96CK0 615 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 LRRC45Q96CN5 670 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TRIM5Q9C035 493 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 UBE2OQ9C0C9 1292 aaKnown RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SLC7A5P2Q9GIP4 190 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 GOLPH3LQ9H4A5 285 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 COMMD8Q9NX08 183 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 IKBKGQ9Y6K9 419 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 PIK3R4Q99570 1358 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 DISP3Q9P2K9 1392 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 PREX2Q70Z35 1606 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 USP32Q8NFA0 1604 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 HOXD12P35452 270 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 PSME1Q06323 249 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SULT2A1Q06520 285 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CUL4AQ13619 759 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC144BQ3MJ40 725 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CMPK2Q5EBM0 449 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SH2D4BQ5SQS7 431 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC144CPQ8IYA2 1237 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TTC39CQ8N584 583 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SMARCC1Q92922 1105 aaPredicted RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TBC1D31Q96DN5 1066 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 ZMAT2Q96NC0 199 aaKnown RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TRAPPC9Q96Q05 1148 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SMC6Q96SB8 1091 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 SENP7Q9BQF6 1050 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 CARD6Q9BX69 1037 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 OSBPL5Q9H0X9 879 aaPredicted RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TAOK3Q9H2K8 898 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 DMAP1Q9NPF5 467 aaPredicted RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 TRMT1Q9NXH9 659 aaKnown RBP9.94□□□□□ -0.82
COMMD3-215ENST00000602574 PARP3Q9Y6F1 533 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 ADGRL1O94910 1474 aa9.94□□□□□ -0.82
COMMD3-215ENST00000602574 NPATQ14207 1427 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC162PA2VCL2 907 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 LRRIQ3A6PVS8 624 aaPredicted RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 PPP1R12BO60237 982 aaPredicted RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 RNF40O75150 1001 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 STAM2O75886 525 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CTCFP49711 727 aaPredicted RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CLCN2P51788 898 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 TSR1Q2NL82 804 aaKnown RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 KIRREL3Q8IZU9 778 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 P3H4Q92791 437 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CGREF1Q99674 301 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 PLEKHA4Q9H4M7 779 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CARD8Q9Y2G2 431 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 SH3GLB1Q9Y371 365 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CEP152O94986 1710 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 TTC21BQ7Z4L5 1316 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 WDR33Q9C0J8 1336 aaKnown RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CCDC69A6NI79 296 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 STXBP3O00186 592 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 CLASP2O75122 1294 aaKnown RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 GADD45BO75293 160 aaPredicted RBP9.93□□□□□ -0.82
COMMD3-215ENST00000602574 BCAR3O75815 825 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 TGFB3P10600 412 aa9.93□□□□□ -0.82
COMMD3-215ENST00000602574 MAP7Q14244 749 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms