RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SMC1BQ8NDV3 1235 aa16.95■□□□□ 0.3
UPF1-211ENST00000600868 KLRG1Q96E93 195 aa16.95■□□□□ 0.3
UPF1-211ENST00000600868 CTNND1O60716 968 aaKnown RBP16.94■□□□□ 0.3
UPF1-211ENST00000600868 KDM4AO75164 1064 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 CASTP20810 708 aaKnown RBP16.94■□□□□ 0.3
UPF1-211ENST00000600868 MCM5P33992 734 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 TFAP4Q01664 338 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 RRP1BQ14684 758 aaKnown RBP16.94■□□□□ 0.3
UPF1-211ENST00000600868 MAP3K11Q16584 847 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 BLOC1S2Q6QNY1 142 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 DHX32Q7L7V1 743 aaKnown RBP16.94■□□□□ 0.3
UPF1-211ENST00000600868 IL27Q8NEV9 243 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 NEDD1Q8NHV4 660 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 NKX2-3Q8TAU0 364 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 GINM1Q9NU53 330 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 ZSWIM5Q9P217 1185 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 WDR19Q8NEZ3 1342 aa16.94■□□□□ 0.3
UPF1-211ENST00000600868 PLIN4Q96Q06 1357 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 TSPY2A6NKD2 308 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 TSPY3P0CV98 308 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 TSPY8P0CW00 308 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 AKR1B1P15121 316 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 RPS6KB1P23443 525 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 CAP2P40123 477 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 IREB2P48200 963 aaKnown RBP16.93■□□□□ 0.3
UPF1-211ENST00000600868 EXOSC10Q01780 885 aaKnown RBP16.93■□□□□ 0.3
UPF1-211ENST00000600868 RABEP1Q15276 862 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 ABCB5Q2M3G0 1257 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 FAM47AQ5JRC9 791 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 RUFY3Q7L099 469 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 CYB5R4Q7L1T6 521 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 MTA3Q9BTC8 594 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 TCP11L1Q9NUJ3 509 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 CYP46A1Q9Y6A2 500 aa16.93■□□□□ 0.3
UPF1-211ENST00000600868 ANTXR2P58335 489 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 FKBP1BP68106 108 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 FMR1Q06787 632 aaKnown RBP eCLIP16.92■□□□□ 0.32e-6■■■■□ 20.1
UPF1-211ENST00000600868 COL9A3Q14050 684 aaPredicted RBP16.92■□□□□ 0.3
UPF1-211ENST00000600868 TMEM179Q6ZVK1 233 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 ARMC9Q7Z3E5 817 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 IQCA1Q86XH1 822 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF1-211ENST00000600868 WRNIP1Q96S55 665 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF1-211ENST00000600868 CABP5Q9NP86 173 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 PASKQ96RG2 1323 aa16.92■□□□□ 0.3
UPF1-211ENST00000600868 IGKV6D-41A0A0C4DH26 115 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 UNCXA6NJT0 531 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 PRC1O43663 620 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 CELF2O95319 508 aaKnown RBP16.91■□□□□ 0.3
UPF1-211ENST00000600868 GDF11O95390 407 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 INPP5BP32019 993 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 MAP3K9P80192 1104 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 FSTL1Q12841 308 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 PRKG1Q13976 671 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 CCDC178Q5BJE1 867 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 NOL9Q5SY16 702 aaKnown RBP16.91■□□□□ 0.3
UPF1-211ENST00000600868 FBXL16Q8N461 479 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 UPF3BQ9BZI7 483 aaKnown RBP16.91■□□□□ 0.3
UPF1-211ENST00000600868 ANGEL1Q9UNK9 670 aaKnown RBP16.91■□□□□ 0.3
UPF1-211ENST00000600868 FZD1Q9UP38 647 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 GREB1LQ9C091 1923 aaPredicted RBP16.91■□□□□ 0.3
UPF1-211ENST00000600868 PAPPA2Q9BXP8 1791 aa16.91■□□□□ 0.3
UPF1-211ENST00000600868 TRPM7Q96QT4 1865 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 MPHOSPH10O00566 681 aaKnown RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 GH2P01242 217 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 ASNSP08243 561 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 CPA1P15085 419 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 JAG1P78504 1218 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 TTLL12Q14166 644 aaPredicted RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 SART3Q15020 963 aaKnown RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 PPP4R3BQ5MIZ7 849 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 TMEM87BQ96K49 555 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 ZSCAN10Q96SZ4 725 aaPredicted RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 UBAC1Q9BSL1 405 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 ALDH8A1Q9H2A2 487 aaPredicted RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 ZNF408Q9H9D4 720 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 GBA2Q9HCG7 927 aaPredicted RBP16.9■□□□□ 0.3
UPF1-211ENST00000600868 IL17RBQ9NRM6 502 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 ZBTB21Q9ULJ3 1066 aa16.9■□□□□ 0.3
UPF1-211ENST00000600868 GUCY1A2P33402 732 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 NOVP48745 357 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 NEK4P51957 841 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 SHROOM1Q2M3G4 852 aaPredicted RBP16.89■□□□□ 0.29
UPF1-211ENST00000600868 LDLRAD1Q5T700 205 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 CST9Q5W186 159 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.89■□□□□ 0.29
UPF1-211ENST00000600868 CHST3Q7LGC8 479 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 ANKRD13AQ8IZ07 590 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 SCYL3Q8IZE3 742 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 C2orf69Q8N8R5 385 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 IGDCC4Q8TDY8 1250 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 ANKS1AQ92625 1134 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 TTC14Q96N46 770 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 KANSL2Q9H9L4 492 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 ATAD5Q96QE3 1844 aa16.89■□□□□ 0.29
UPF1-211ENST00000600868 DOCK1Q14185 1865 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 IFIT3O14879 490 aaKnown RBP16.88■□□□□ 0.29
UPF1-211ENST00000600868 NMT2O60551 498 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 SEPT2Q15019 361 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms