RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 BACH2Q9BYV9 841 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 OSBPL5Q9H0X9 879 aaPredicted RBP15.28■□□□□ 0.04
UPF1-208ENST00000600012 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.28■□□□□ 0.04
UPF1-208ENST00000600012 PNMA3Q9UL41 463 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 MAST2Q6P0Q8 1798 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 ATP5JP18859 108 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 IRF5Q13568 498 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 TTC39AQ5SRH9 613 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 PI16Q6UXB8 463 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 CCDC84Q86UT8 332 aaPredicted RBP15.27■□□□□ 0.04
UPF1-208ENST00000600012 PROCA1Q8NCQ7 364 aaPredicted RBP15.27■□□□□ 0.04
UPF1-208ENST00000600012 PXYLP1Q8TE99 480 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 U2AF1L4Q8WU68 220 aaKnown RBP15.27■□□□□ 0.04
UPF1-208ENST00000600012 DPF3Q92784 378 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 TBC1D2Q9BYX2 928 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 RAI14Q9P0K7 980 aa15.27■□□□□ 0.04
UPF1-208ENST00000600012 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.27■□□□□ 0.04
UPF1-208ENST00000600012 FAM196BA6NMK8 535 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 CDC45O75419 566 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 UQCRFS1P1P0C7P4 283 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 CAPN2P17655 700 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 FAM110CQ1W6H9 321 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 CCDC158Q5M9N0 1113 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 TBC1D9Q6ZT07 1266 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 UNC93B1Q9H1C4 597 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 NDUFB9Q9Y6M9 179 aa15.26■□□□□ 0.03
UPF1-208ENST00000600012 CDK5RAP2Q96SN8 1893 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 FARP2O94887 1054 aaPredicted RBP15.25■□□□□ 0.03
UPF1-208ENST00000600012 SGPL1O95470 568 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 INHAP05111 366 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 ELNP15502 786 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 MCAMP43121 646 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 SPP2Q13103 211 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 TREML2Q5T2D2 321 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 CHRDL2Q6WN34 429 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 TEX11Q8IYF3 940 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 ANKRD13CQ8N6S4 541 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 ZNF280CQ8ND82 737 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 COA7Q96BR5 231 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 EDC3Q96F86 508 aaKnown RBP15.25■□□□□ 0.03
UPF1-208ENST00000600012 DNAJC2Q99543 621 aaKnown RBP15.25■□□□□ 0.03
UPF1-208ENST00000600012 NOL10Q9BSC4 688 aaKnown RBP15.25■□□□□ 0.03
UPF1-208ENST00000600012 TSHZ2Q9NRE2 1034 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 LRP2BPQ9P2M1 347 aa15.25■□□□□ 0.03
UPF1-208ENST00000600012 HERC5Q9UII4 1024 aaKnown RBP15.25■□□□□ 0.03
UPF1-208ENST00000600012 SIPA1L1O43166 1804 aa15.24■□□□□ 0.03
UPF1-208ENST00000600012 FOCADQ5VW36 1801 aa15.24■□□□□ 0.03
UPF1-208ENST00000600012 CAP2P40123 477 aa15.24■□□□□ 0.03
UPF1-208ENST00000600012 GCLCP48506 637 aaPredicted RBP15.24■□□□□ 0.03
UPF1-208ENST00000600012 PABPC4Q13310 644 aaKnown RBP eCLIP15.24■□□□□ 0.03
UPF1-208ENST00000600012 HAUS7Q99871 368 aa15.24■□□□□ 0.03
UPF1-208ENST00000600012 USP17L5A8MUK1 530 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 SEC24BO95487 1268 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.23■□□□□ 0.03
UPF1-208ENST00000600012 DHX36Q9H2U1 1008 aaKnown RBP15.23■□□□□ 0.03
UPF1-208ENST00000600012 AS3MTQ9HBK9 375 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 SNRKQ9NRH2 765 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 TAOK2Q9UL54 1235 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 NR2E3Q9Y5X4 410 aa15.23■□□□□ 0.03
UPF1-208ENST00000600012 BAG3O95817 575 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 PLCG2P16885 1265 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 HMGCS2P54868 508 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 SH3D19Q5HYK7 790 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 SH3RF3Q8TEJ3 882 aaPredicted RBP15.22■□□□□ 0.03
UPF1-208ENST00000600012 EVI5LQ96CN4 794 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 PAK6Q9NQU5 681 aaPredicted RBP15.22■□□□□ 0.03
UPF1-208ENST00000600012 PI4KBQ9UBF8 816 aa15.22■□□□□ 0.03
UPF1-208ENST00000600012 GOLIM4O00461 696 aa15.21■□□□□ 0.03
UPF1-208ENST00000600012 ZAP70P43403 619 aa15.21■□□□□ 0.03
UPF1-208ENST00000600012 RRP1BQ14684 758 aaKnown RBP15.21■□□□□ 0.03
UPF1-208ENST00000600012 NAA16Q6N069 864 aaPredicted RBP15.21■□□□□ 0.03
UPF1-208ENST00000600012 ZNF512BQ96KM6 892 aaPredicted RBP15.21■□□□□ 0.03
UPF1-208ENST00000600012 DEFB118Q96PH6 123 aa15.21■□□□□ 0.03
UPF1-208ENST00000600012 FSD1Q9BTV5 496 aa15.21■□□□□ 0.03
UPF1-208ENST00000600012 PAG1Q9NWQ8 432 aa15.21■□□□□ 0.03
UPF1-208ENST00000600012 AATFQ9NY61 560 aaKnown RBP eCLIP15.21■□□□□ 0.03
UPF1-208ENST00000600012 RBM27Q9P2N5 1060 aaKnown RBP15.21■□□□□ 0.03
UPF1-208ENST00000600012 IGSF3O75054 1194 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 TFRCP02786 760 aaKnown RBP15.2■□□□□ 0.02
UPF1-208ENST00000600012 ASNSP08243 561 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 CHMLP26374 656 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 PPP4CP60510 307 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 WDR18Q9BV38 432 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 CRISPLD2Q9H0B8 497 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 ASCC2Q9H1I8 757 aaPredicted RBP15.2■□□□□ 0.02
UPF1-208ENST00000600012 ANTXR1Q9H6X2 564 aa15.2■□□□□ 0.02
UPF1-208ENST00000600012 ALPK3Q96L96 1907 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 HMGCRP04035 888 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 MFAP1P55081 439 aaKnown RBP15.19■□□□□ 0.02
UPF1-208ENST00000600012 IRX3P78415 501 aaPredicted RBP15.19■□□□□ 0.02
UPF1-208ENST00000600012 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.19■□□□□ 0.02
UPF1-208ENST00000600012 PRO3102Q9H379 93 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 GINM1Q9NU53 330 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 MORF4L1Q9UBU8 362 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 PLXNB2O15031 1838 aa15.19■□□□□ 0.02
UPF1-208ENST00000600012 FLT1P17948 1338 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 MYH1P12882 1939 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 EVI5O60447 810 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 CYP2E1P05181 493 aaPredicted RBP15.18■□□□□ 0.02
UPF1-208ENST00000600012 BACE1P56817 501 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms