RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 SHMT1P34896 483 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 PDE1AP54750 535 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 EVX2Q03828 476 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 SPP2Q13103 211 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 SLC4A8Q2Y0W8 1093 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 SH3D19Q5HYK7 790 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 C17orf99Q6UX52 265 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 PROCA1Q8NCQ7 364 aaPredicted RBP11.69□□□□□ -0.54
VRK3-215ENST00000599138 APPBP2Q92624 585 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 OSBP2Q969R2 916 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 ERO1AQ96HE7 468 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 STRBPQ96SI9 672 aaKnown RBP11.69□□□□□ -0.54
VRK3-215ENST00000599138 TRIM34Q9BYJ4 488 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 ZBTB21Q9ULJ3 1066 aa11.69□□□□□ -0.54
VRK3-215ENST00000599138 GDF11O95390 407 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 POLR3DP05423 398 aaPredicted RBP11.68□□□□□ -0.54
VRK3-215ENST00000599138 CYP2D6P10635 497 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 OTOP1Q7RTM1 612 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 CD99L2Q8TCZ2 262 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 PARK7Q99497 189 aaKnown RBP11.68□□□□□ -0.54
VRK3-215ENST00000599138 AS3MTQ9HBK9 375 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
VRK3-215ENST00000599138 AGTPBP1Q9UPW5 1226 aa11.68□□□□□ -0.54
VRK3-215ENST00000599138 CAPN15O75808 1086 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 GH2P01242 217 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 CYP2C8P10632 490 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 BCRP11274 1271 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 HMGCS2P54868 508 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 BACE1P56817 501 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 NUCB1Q02818 461 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 LRRFIP1Q32MZ4 808 aaKnown RBP11.67□□□□□ -0.54
VRK3-215ENST00000599138 CERKLQ49MI3 558 aaPredicted RBP11.67□□□□□ -0.54
VRK3-215ENST00000599138 TREML2Q5T2D2 321 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 C12orf60Q5U649 245 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 FBXO46Q6PJ61 603 aaPredicted RBP11.67□□□□□ -0.54
VRK3-215ENST00000599138 GADL1Q6ZQY3 521 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 LNPKQ9C0E8 428 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 SLC4A4Q9Y6R1 1079 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 DOCK3Q8IZD9 2030 aa11.67□□□□□ -0.54
VRK3-215ENST00000599138 MYH8P13535 1937 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 GSG1L2A8MUP6 293 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 C19orf81C9J6K1 198 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 USP17L12C9JPN9 530 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 USP17L21D6R901 530 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 SMIM22K7EJ46 135 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 GUCY1A2P33402 732 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 LACTBP83111 547 aaPredicted RBP11.66□□□□□ -0.54
VRK3-215ENST00000599138 ABCB5Q2M3G0 1257 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 ZMYM1Q5SVZ6 1142 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 GIMAP6Q6P9H5 292 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 CTR9Q6PD62 1173 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 CHD1LQ86WJ1 897 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 TICAM2Q86XR7 235 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 OSBPL3Q9H4L5 887 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 EFCC1Q9HA90 598 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 SWAP70Q9UH65 585 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 CPA4Q9UI42 421 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 TRIM17Q9Y577 477 aa11.66□□□□□ -0.54
VRK3-215ENST00000599138 PDE4DIPQ5VU43 2346 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 CYP2D7A0A087X1C5 515 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 USP17L10C9JJH3 530 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 M0R2C6 588 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 GPAA1O43292 621 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 MTMR2Q13614 643 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 SBK1Q52WX2 424 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 B4GALNT3Q6L9W6 998 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 PLEKHM2Q8IWE5 1019 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 SLC44A5Q8NCS7 719 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 EVI5LQ96CN4 794 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 DYNLL2Q96FJ2 89 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 FSD1Q9BTV5 496 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 ARHGAP39Q9C0H5 1083 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 PTPN22Q9Y2R2 807 aa11.65□□□□□ -0.54
VRK3-215ENST00000599138 ZSWIM8A7E2V4 1837 aa11.65□□□□□ -0.55
VRK3-215ENST00000599138 CCDC85CA6NKD9 419 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 GNRH1P01148 92 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 GNAT2P19087 354 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 CTGFP29279 349 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 HOXA7P31268 230 aaPredicted RBP11.64□□□□□ -0.55
VRK3-215ENST00000599138 CDK8P49336 464 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 IRX6P78412 446 aaPredicted RBP11.64□□□□□ -0.55
VRK3-215ENST00000599138 ARHGEF6Q15052 776 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 C16orf86Q6ZW13 317 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 DDRGK1Q96HY6 314 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 C12orf42Q96LP6 360 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 SEC62Q99442 399 aaKnown RBP11.64□□□□□ -0.55
VRK3-215ENST00000599138 EPB41L4AQ9HCS5 686 aaPredicted RBP11.64□□□□□ -0.55
VRK3-215ENST00000599138 CABP5Q9NP86 173 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 EMILIN3Q9NT22 766 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 ARPP21Q9UBL0 812 aaPredicted RBP11.64□□□□□ -0.55
VRK3-215ENST00000599138 PNMA3Q9UL41 463 aa11.64□□□□□ -0.55
VRK3-215ENST00000599138 MGAMO43451 1857 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 CENPFP49454 3210 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 PATL2C9JE40 543 aaKnown RBP11.63□□□□□ -0.55
VRK3-215ENST00000599138 PABPC4Q13310 644 aaKnown RBP eCLIP11.63□□□□□ -0.55
VRK3-215ENST00000599138 SEPT2Q15019 361 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 RAB3GAP1Q15042 981 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 USP17L2Q6R6M4 530 aa11.63□□□□□ -0.55
VRK3-215ENST00000599138 AMOTL1Q8IY63 956 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms