RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 TM4SF1P30408 202 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 TTF1Q15361 905 aaPredicted RBP12.42□□□□□ -0.42
VPS4B-206ENST00000591475 RIC1Q4ADV7 1423 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 CCDC152Q4G0S7 254 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 PI16Q6UXB8 463 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 PHKBQ93100 1093 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 CLIC6Q96NY7 704 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 GREM2Q9H772 168 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ST7Q9NRC1 585 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 PPP2R2CQ9Y2T4 447 aa12.42□□□□□ -0.42
VPS4B-206ENST00000591475 ANKRD18BA2A2Z9 1011 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 GOLGA8AA7E2F4 631 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 APPP05067 770 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 RXRAP19793 462 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 TBX2Q13207 712 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-206ENST00000591475 NFXL1Q6ZNB6 911 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 MICU3Q86XE3 530 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 KRI1Q8N9T8 703 aaKnown RBP12.41□□□□□ -0.42
VPS4B-206ENST00000591475 CCDC85AQ96PX6 553 aaPredicted RBP12.41□□□□□ -0.42
VPS4B-206ENST00000591475 CARD6Q9BX69 1037 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 DACH1Q9UI36 760 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 PCDHA5Q9Y5H7 936 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 PARP3Q9Y6F1 533 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 STK36Q9NRP7 1315 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 MYH3P11055 1940 aa12.41□□□□□ -0.42
VPS4B-206ENST00000591475 VWA3AA6NCI4 1184 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 B4E1Z4 1266 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 ATP8B1O43520 1251 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 CASQ1P31415 396 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 MCAMP43121 646 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 GOLGA8FQ08AF8 430 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 GOLGA8DPQ0D2H9 430 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 NTRK3Q16288 839 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 METTL24Q5JXM2 366 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 SLC9C2Q5TAH2 1124 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 TMEM139Q8IV31 216 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 CNBD1Q8NA66 436 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 ZNF512BQ96KM6 892 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-206ENST00000591475 BAG1Q99933 345 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-206ENST00000591475 TAOK2Q9UL54 1235 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 DENND2AQ9ULE3 1009 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 COL24A1Q17RW2 1714 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 STX10O60499 249 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 PLA2G4AP47712 749 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 SSRP1Q08945 709 aaKnown RBP12.4□□□□□ -0.42
VPS4B-206ENST00000591475 UBE3CQ15386 1083 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 SF3B3Q15393 1217 aaKnown RBP12.4□□□□□ -0.42
VPS4B-206ENST00000591475 SGMS1Q86VZ5 419 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 FOXP4Q8IVH2 680 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-206ENST00000591475 WASF1Q92558 559 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 NLRP3Q96P20 1036 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 INTS13Q9NVM9 706 aa12.4□□□□□ -0.42
VPS4B-206ENST00000591475 RTL9Q8NET4 1388 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 FANCGO15287 622 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 RANBP6O60518 1105 aaKnown RBP12.39□□□□□ -0.43
VPS4B-206ENST00000591475 SERPINB2P05120 415 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 MDM2Q00987 491 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-206ENST00000591475 PDE4BQ07343 736 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 TMEM67Q5HYA8 995 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 PDILTQ8N807 584 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 MLKLQ8NB16 471 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 IGDCC4Q8TDY8 1250 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 LY9Q9HBG7 655 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 MAN1B1Q9UKM7 699 aa12.39□□□□□ -0.43
VPS4B-206ENST00000591475 POLRMTO00411 1230 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 FMNL1O95466 1100 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 CDK11BP21127 795 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 BMP6P22004 513 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 GNG11P61952 73 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 POSTNQ15063 836 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SAFBQ15424 915 aaKnown RBP eCLIP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 TEX35Q5T0J7 233 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SPECC1LQ69YQ0 1117 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 LDHAL6AQ6ZMR3 332 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 NOSTRINQ8IVI9 506 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 FAM177A1Q8N128 213 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 NKX2-3Q8TAU0 364 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SLC26A6Q9BXS9 759 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SENP2Q9HC62 589 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 PIH1D3Q9NQM4 214 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 CALCOCO1Q9P1Z2 691 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 RIPOR2Q9Y4F9 1068 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ZNF532Q9HCE3 1301 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 TIAM2Q8IVF5 1701 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ERICH4A6NGS2 130 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 IDH1O75874 414 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 CYP2C19P33261 490 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 LIFRP42702 1097 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ST5P78524 1137 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 MAP3K9P80192 1104 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ALX1Q15699 326 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 PTPN21Q16825 1174 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 PRR5LQ6MZQ0 368 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 GPR161Q8N6U8 529 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ENOX1Q8TC92 643 aaKnown RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SMARCE1Q969G3 411 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 FAM217BQ9NTX9 383 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-206ENST00000591475 SLC12A7Q9Y666 1083 aa12.38□□□□□ -0.43
VPS4B-206ENST00000591475 ARAP2Q8WZ64 1704 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 LAMB2P55268 1798 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms