RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 AP3B2Q13367 1082 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 COL9A2Q14055 689 aaPredicted RBP6.76□□□□□ -1.33
SS18-223ENST00000583595 PDE3AQ14432 1141 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 NFKBIBQ15653 356 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 PLEKHG6Q3KR16 790 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 SEZ6Q53EL9 994 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 PAOXQ6QHF9 649 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 LRP10Q7Z4F1 713 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 FBXL6Q8N531 539 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 CCDC113Q9H0I3 377 aa6.76□□□□□ -1.33
SS18-223ENST00000583595 DDX56Q9NY93 547 aaKnown RBP6.76□□□□□ -1.33
SS18-223ENST00000583595 TLR3O15455 904 aaKnown RBP6.75□□□□□ -1.33
SS18-223ENST00000583595 CELA3AP09093 270 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 RLBP1P12271 317 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 GRIK1P39086 918 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 SNAP47Q5SQN1 464 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 DYMQ7RTS9 669 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 SLITRK4Q8IW52 837 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 APPBP2Q92624 585 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 YIPF2Q9BWQ6 316 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 SLKQ9H2G2 1235 aaPredicted RBP6.75□□□□□ -1.33
SS18-223ENST00000583595 CHPF2Q9P2E5 772 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 MSRB2Q9Y3D2 182 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 ACTL7BQ9Y614 415 aa6.75□□□□□ -1.33
SS18-223ENST00000583595 AOC2O75106 756 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 TFE3P19532 575 aaPredicted RBP6.74□□□□□ -1.33
SS18-223ENST00000583595 LMNB2Q03252 620 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 SEPT6Q14141 434 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 INTS5Q6P9B9 1019 aaKnown RBP6.74□□□□□ -1.33
SS18-223ENST00000583595 GIMAP7Q8NHV1 300 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 FBXO27Q8NI29 283 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 EZH1Q92800 747 aaPredicted RBP6.74□□□□□ -1.33
SS18-223ENST00000583595 ZC3H12CQ9C0D7 883 aaKnown RBP6.74□□□□□ -1.33
SS18-223ENST00000583595 ATG3Q9NT62 314 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 AP4E1Q9UPM8 1137 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 LEMD3Q9Y2U8 911 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 PRKAB1Q9Y478 270 aa6.74□□□□□ -1.33
SS18-223ENST00000583595 KIAA1324LA8MWY0 1029 aaPredicted RBP6.73□□□□□ -1.33
SS18-223ENST00000583595 MAP4K4O95819 1239 aaPredicted RBP6.73□□□□□ -1.33
SS18-223ENST00000583595 F13BP05160 661 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 RAB6AP20340 208 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 MCM4P33991 863 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 SQSTM1Q13501 440 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 FBXW10Q5XX13 1052 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 SHISA5Q8N114 240 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 ANKRD24Q8TF21 1146 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 WDR18Q9BV38 432 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 IRF2BPLQ9H1B7 796 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 GPN3Q9UHW5 284 aaPredicted RBP6.73□□□□□ -1.33
SS18-223ENST00000583595 PPM1HQ9ULR3 514 aa6.73□□□□□ -1.33
SS18-223ENST00000583595 PDPK1O15530 556 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 PAGE1O75459 146 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 NFICP08651 508 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 LIG1P18858 919 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 ADMP35318 185 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 ASPAP45381 313 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 GIPRP48546 466 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 MASP1P48740 699 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 EIF6P56537 245 aaKnown RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 PPP2R3AQ06190 1150 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 IFRD2Q12894 506 aaPredicted RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 MAP7Q14244 749 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 TTBK2Q6IQ55 1244 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 BNC2Q6ZN30 1099 aaPredicted RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 FAM196AQ6ZSG2 479 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 KIAA0907Q7Z7F0 614 aaPredicted RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 HOMER1Q86YM7 354 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 JARID2Q92833 1246 aaPredicted RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 WDR89Q96FK6 387 aaPredicted RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 TNKS2Q9H2K2 1166 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 CCDC86Q9H6F5 360 aaKnown RBP6.72□□□□□ -1.33
SS18-223ENST00000583595 FAM105AQ9NUU6 356 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 TMEM39AQ9NV64 488 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 PPP1R9AQ9ULJ8 1098 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 PCDHB5Q9Y5E4 795 aa6.72□□□□□ -1.33
SS18-223ENST00000583595 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.71□□□□□ -1.34
SS18-223ENST00000583595 ENC1O14682 589 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 TRIM37O94972 964 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 F13A1P00488 732 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 DDR2Q16832 855 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 TKFCQ3LXA3 575 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 TNNI3KQ59H18 835 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 CCDC181Q5TID7 509 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 AGMOQ6ZNB7 445 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 TBC1D32Q96NH3 1257 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 OSBPL1AQ9BXW6 950 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 ACSS3Q9H6R3 686 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 PIM2Q9P1W9 311 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 FAN1Q9Y2M0 1017 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 SYNGAP1Q96PV0 1343 aa6.71□□□□□ -1.34
SS18-223ENST00000583595 GSTP1P09211 210 aaKnown RBP6.7□□□□□ -1.34
SS18-223ENST00000583595 SLFN14P0C7P3 912 aa6.7□□□□□ -1.34
SS18-223ENST00000583595 HCLS1P14317 486 aaPredicted RBP6.7□□□□□ -1.34
SS18-223ENST00000583595 SPINK2P20155 84 aa6.7□□□□□ -1.34
SS18-223ENST00000583595 HOXA10P31260 410 aaPredicted RBP6.7□□□□□ -1.34
SS18-223ENST00000583595 EVA1CP58658 441 aa6.7□□□□□ -1.34
SS18-223ENST00000583595 ARSHQ5FYA8 562 aa6.7□□□□□ -1.34
SS18-223ENST00000583595 ZAR1Q86SH2 424 aa6.7□□□□□ -1.34
SS18-223ENST00000583595 NECAB3Q96P71 396 aaPredicted RBP6.7□□□□□ -1.34
SS18-223ENST00000583595 CRBNQ96SW2 442 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms