RNA–Protein interactions for RNA: ENST00000580654.5

SMARCE1-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-217ENST00000580654 MORF4L1Q9UBU8 362 aa9.73□□□□□ -0.85
SMARCE1-217ENST00000580654 PNMA3Q9UL41 463 aa9.73□□□□□ -0.85
SMARCE1-217ENST00000580654 MYH2Q9UKX2 1941 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 TCF20Q9UGU0 1960 aaKnown RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 DDTLA6NHG4 134 aaPredicted RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 CTNND1O60716 968 aaKnown RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 FRAT2O75474 233 aaPredicted RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 RGS3P49796 1198 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 BEND3Q5T5X7 828 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 BADQ92934 168 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 TSR2Q969E8 191 aaKnown RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 KAZALD1Q96I82 304 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 ASB2Q96Q27 587 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 CHMP4AQ9BY43 222 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 ASCC2Q9H1I8 757 aaPredicted RBP9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 TXNRD2Q9NNW7 524 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 USP40Q9NVE5 1235 aa9.72□□□□□ -0.85
SMARCE1-217ENST00000580654 APAF1O14727 1248 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 ZKSCAN1P17029 563 aaPredicted RBP9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 EPHB4P54760 987 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 FKBP5Q13451 457 aaPredicted RBP9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 LRRC24Q50LG9 513 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 CAVIN4Q5BKX8 364 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 SH3RF1Q7Z6J0 888 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 ATXN2LQ8WWM7 1075 aaKnown RBP9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 UHRF1Q96T88 793 aaPredicted RBP9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 NUDT12Q9BQG2 462 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 C1QTNF1Q9BXJ1 281 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 LRRFIP2Q9Y608 721 aaKnown RBP9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 MROH5Q6ZUA9 1318 aa9.71□□□□□ -0.86
SMARCE1-217ENST00000580654 TRIM43BA6NCK2 446 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 F6X3S4 739 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 ENTPD3O75355 529 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 ITGB8P26012 769 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 PRDX5P30044 214 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 HMGCS2P54868 508 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 CALD1Q05682 793 aaKnown RBP9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 SPP2Q13103 211 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 TWISTNBQ3B726 338 aaPredicted RBP9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 MORN1Q5T089 497 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 POTEEQ6S8J3 1075 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 SOCS4Q8WXH5 440 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 TRIM43Q96BQ3 446 aaPredicted RBP9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 NECAB3Q96P71 396 aaPredicted RBP9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 IDI2Q9BXS1 227 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 DDX4Q9NQI0 724 aaKnown RBP9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 FLRT1Q9NZU1 646 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 PRKAG2Q9UGJ0 569 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 ATP11BQ9Y2G3 1177 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 HCN4Q9Y3Q4 1203 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 MUC6Q6W4X9 2439 aa9.7□□□□□ -0.86
SMARCE1-217ENST00000580654 FAM196BA6NMK8 535 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 GRM8O00222 908 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 REV3LO60673 3130 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PDE8BO95263 885 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 FGFR2P21802 821 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PDE3AQ14432 1141 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 RRP1BQ14684 758 aaKnown RBP9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 SNX17Q15036 470 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 WDR43Q15061 677 aaKnown RBP eCLIP9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 RALBP1Q15311 655 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 Q3C1V9 767 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 TRMT44Q8IYL2 757 aaKnown RBP9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PPM1EQ8WY54 764 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 KHSRPQ92945 711 aaKnown RBP eCLIP9.69□□□□□ -0.867e-7■■■□□ 17.5
SMARCE1-217ENST00000580654 SUCLG2Q96I99 432 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PORCNQ9H237 461 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PRDM5Q9NQX1 630 aaPredicted RBP9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PDLIM7Q9NR12 457 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 THEGQ9P2T0 379 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 PLXNA1Q9UIW2 1896 aa9.69□□□□□ -0.86
SMARCE1-217ENST00000580654 KIF16BQ96L93 1317 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 DNM1LO00429 736 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 DNAJB2P25686 324 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 RGS2P41220 211 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 TRIM60Q495X7 471 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 SH3D19Q5HYK7 790 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 METTL24Q5JXM2 366 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 SLC39A5Q6ZMH5 540 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 GPR142Q7Z601 462 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 ZNF280CQ8ND82 737 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 TRPV1Q8NER1 839 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 WDR66Q8TBY9 1149 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 LPAR1Q92633 364 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 P2RX7Q99572 595 aaKnown RBP9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 APBA2Q99767 749 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 LRFN3Q9BTN0 628 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 ZNF576Q9H609 170 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 RBPJLQ9UBG7 517 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 DDX20Q9UHI6 824 aaKnown RBP9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 CIZ1Q9ULV3 898 aaPredicted RBP9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 SIPA1L1O43166 1804 aa9.68□□□□□ -0.86
SMARCE1-217ENST00000580654 GAKO14976 1311 aa9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 MYBBP1AQ9BQG0 1328 aaKnown RBP9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 IGHA2P01877 340 aa9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 MRPS5P82675 430 aaKnown RBP9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 PABPC4Q13310 644 aaKnown RBP eCLIP9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 AKNAD1Q5T1N1 836 aa9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 GJC2Q5T442 439 aaPredicted RBP9.67□□□□□ -0.86
SMARCE1-217ENST00000580654 ZSCAN29Q8IWY8 852 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms