RNA–Protein interactions for RNA: ENST00000576353.5

SNF8-217, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-217ENST00000576353 SIPA1L1O43166 1804 aa28.2■■■□□ 2.11
SNF8-217ENST00000576353 GPAA1O43292 621 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 JAG1P78504 1218 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 CERKLQ49MI3 558 aaPredicted RBP28.2■■■□□ 2.1
SNF8-217ENST00000576353 GIMAP6Q6P9H5 292 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 GADL1Q6ZQY3 521 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 CTU1Q7Z7A3 348 aaKnown RBP28.2■■■□□ 2.1
SNF8-217ENST00000576353 TICAM2Q86XR7 235 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 OSBPL3Q9H4L5 887 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 MYH1P12882 1939 aa28.2■■■□□ 2.1
SNF8-217ENST00000576353 USP17L12C9JPN9 530 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 USP17L21D6R901 530 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 TLR2O60603 784 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 CYP2D6P10635 497 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 ZMYM1Q5SVZ6 1142 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 IFFO2Q5TF58 517 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 GPAT2Q6NUI2 795 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 SWAP70Q9UH65 585 aa28.19■■■□□ 2.1
SNF8-217ENST00000576353 MYH7P12883 1935 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 GH2P01242 217 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 SHMT1P34896 483 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 SP3Q02447 781 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 ABCB5Q2M3G0 1257 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 C12orf60Q5U649 245 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 MCOLN1Q9GZU1 580 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 CABP5Q9NP86 173 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 SLC45A1Q9Y2W3 748 aa28.18■■■□□ 2.1
SNF8-217ENST00000576353 GSG1L2A8MUP6 293 aa28.17■■■□□ 2.1
SNF8-217ENST00000576353 M0R2C6 588 aa28.17■■■□□ 2.1
SNF8-217ENST00000576353 PROCA1Q8NCQ7 364 aaPredicted RBP28.17■■■□□ 2.1
SNF8-217ENST00000576353 ERO1AQ96HE7 468 aa28.17■■■□□ 2.1
SNF8-217ENST00000576353 ARPP21Q9UBL0 812 aaPredicted RBP28.17■■■□□ 2.1
SNF8-217ENST00000576353 TRIM6-TRIM34B2RNG4 842 aa28.16■■■□□ 2.1
SNF8-217ENST00000576353 CTR9Q6PD62 1173 aa28.16■■■□□ 2.1
SNF8-217ENST00000576353 PARK7Q99497 189 aaKnown RBP28.16■■■□□ 2.1
SNF8-217ENST00000576353 C19orf81C9J6K1 198 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 BACE1P56817 501 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 EVX2Q03828 476 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 PKN2Q16513 984 aaKnown RBP28.15■■■□□ 2.1
SNF8-217ENST00000576353 SHROOM1Q2M3G4 852 aaPredicted RBP28.15■■■□□ 2.1
SNF8-217ENST00000576353 SH3D19Q5HYK7 790 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 AGTPBP1Q9UPW5 1226 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 DDX60LQ5H9U9 1706 aaKnown RBP28.15■■■□□ 2.1
SNF8-217ENST00000576353 NAV1Q8NEY1 1877 aa28.15■■■□□ 2.1
SNF8-217ENST00000576353 PATL2C9JE40 543 aaKnown RBP28.14■■■□□ 2.1
SNF8-217ENST00000576353 USP17L10C9JJH3 530 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 APPP05067 770 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 HMGCS2P54868 508 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 SBK1Q52WX2 424 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 DYNLL2Q96FJ2 89 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 SEC62Q99442 399 aaKnown RBP28.14■■■□□ 2.1
SNF8-217ENST00000576353 NACAP1Q9BZK3 213 aa28.14■■■□□ 2.1
SNF8-217ENST00000576353 CYP2D7A0A087X1C5 515 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 MTMR2Q13614 643 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 RAB3GAP1Q15042 981 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 ARHGEF6Q15052 776 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 RILPL2Q969X0 211 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 ABHD8Q96I13 439 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 TMOD4Q9NZQ9 345 aa28.13■■■□□ 2.09
SNF8-217ENST00000576353 TDO2P48775 406 aa28.12■■■□□ 2.09
SNF8-217ENST00000576353 PABPC4Q13310 644 aaKnown RBP eCLIP28.12■■■□□ 2.092e-8■■■□□ 14.8
SNF8-217ENST00000576353 C16orf86Q6ZW13 317 aa28.12■■■□□ 2.09
SNF8-217ENST00000576353 HELLSQ9NRZ9 838 aa28.12■■■□□ 2.09
SNF8-217ENST00000576353 MPHOSPH10O00566 681 aaKnown RBP28.11■■■□□ 2.09
SNF8-217ENST00000576353 CDK8P49336 464 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 C17orf99Q6UX52 265 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 SLC44A5Q8NCS7 719 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 CD99L2Q8TCZ2 262 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 CCDC17Q96LX7 622 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 PNMA3Q9UL41 463 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 PHIPQ8WWQ0 1821 aa28.11■■■□□ 2.09
SNF8-217ENST00000576353 CYP2C8P10632 490 aa28.1■■■□□ 2.09
SNF8-217ENST00000576353 TREML2Q5T2D2 321 aa28.1■■■□□ 2.09
SNF8-217ENST00000576353 IFNL3Q8IZI9 196 aa28.1■■■□□ 2.09
SNF8-217ENST00000576353 CPA4Q9UI42 421 aa28.1■■■□□ 2.09
SNF8-217ENST00000576353 MINDY4BA8MYZ0 360 aa28.09■■■□□ 2.09
SNF8-217ENST00000576353 KIF22Q14807 665 aa28.09■■■□□ 2.09
SNF8-217ENST00000576353 TMEM179Q6ZVK1 233 aa28.09■■■□□ 2.09
SNF8-217ENST00000576353 FEZ1Q99689 392 aa28.09■■■□□ 2.09
SNF8-217ENST00000576353 TRIM17Q9Y577 477 aa28.09■■■□□ 2.09
SNF8-217ENST00000576353 ATAD5Q96QE3 1844 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 OSBPP22059 807 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 SEPT2Q15019 361 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 USP17L2Q6R6M4 530 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 SMCR8Q8TEV9 937 aaPredicted RBP28.08■■■□□ 2.09
SNF8-217ENST00000576353 EFCC1Q9HA90 598 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 EPB41L4AQ9HCS5 686 aaPredicted RBP28.08■■■□□ 2.09
SNF8-217ENST00000576353 ADGRA2Q96PE1 1338 aa28.08■■■□□ 2.09
SNF8-217ENST00000576353 SMIM22K7EJ46 135 aa28.07■■■□□ 2.08
SNF8-217ENST00000576353 PDE4AP27815 886 aa28.07■■■□□ 2.08
SNF8-217ENST00000576353 GUCY1A2P33402 732 aa28.07■■■□□ 2.08
SNF8-217ENST00000576353 USP14P54578 494 aa28.07■■■□□ 2.08
SNF8-217ENST00000576353 MCMDC2Q4G0Z9 681 aa28.07■■■□□ 2.08
SNF8-217ENST00000576353 LACTBP83111 547 aaPredicted RBP28.06■■■□□ 2.08
SNF8-217ENST00000576353 FBXO46Q6PJ61 603 aaPredicted RBP28.06■■■□□ 2.08
SNF8-217ENST00000576353 CCDC129Q6ZRS4 1044 aa28.06■■■□□ 2.08
SNF8-217ENST00000576353 OTOP1Q7RTM1 612 aa28.06■■■□□ 2.08
SNF8-217ENST00000576353 FAM227BQ96M60 508 aa28.06■■■□□ 2.08
SNF8-217ENST00000576353 KIAA1683Q9H0B3 1180 aa28.06■■■□□ 2.08
SNF8-217ENST00000576353 NAPBQ9H115 298 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms