RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 PTPN18Q99952 460 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 DHX36Q9H2U1 1008 aaKnown RBP9.46□□□□□ -0.9
CCDC40-215ENST00000576033 HELLSQ9NRZ9 838 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 ATP8A2Q9NTI2 1148 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 SERPINB13Q9UIV8 391 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 ZBTB21Q9ULJ3 1066 aa9.46□□□□□ -0.9
CCDC40-215ENST00000576033 PARP14Q460N5 1801 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 TRIM75PA6NK02 468 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 PATL2C9JE40 543 aaKnown RBP9.45□□□□□ -0.9
CCDC40-215ENST00000576033 FOXN1O15353 648 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 TBC1D12O60347 775 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 IGSF3O75054 1194 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 CAP2P40123 477 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 CDK8P49336 464 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 ZYXQ15942 572 aaKnown RBP9.45□□□□□ -0.9
CCDC40-215ENST00000576033 TATDN1Q6P1N9 297 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 C16orf86Q6ZW13 317 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 ACER1Q8TDN7 264 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 MS4A4AQ96JQ5 239 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.45□□□□□ -0.9
CCDC40-215ENST00000576033 TRIM34Q9BYJ4 488 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 NAPBQ9H115 298 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 EHD4Q9H223 541 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 ARPP21Q9UBL0 812 aaPredicted RBP9.45□□□□□ -0.9
CCDC40-215ENST00000576033 HERC5Q9UII4 1024 aaKnown RBP9.45□□□□□ -0.9
CCDC40-215ENST00000576033 NEDD4P46934 1319 aa9.45□□□□□ -0.9
CCDC40-215ENST00000576033 BRCA2P51587 3418 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CCL15-CCL14A0A0B4J2E2 113 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 MPHOSPH10O00566 681 aaKnown RBP9.44□□□□□ -0.9
CCDC40-215ENST00000576033 SGSM2O43147 1006 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 PEX10O60683 326 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 ECM2O94769 699 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-215ENST00000576033 FGAP02671 866 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 RASA1P20936 1047 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 ECE1P42892 770 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CAP1Q01518 475 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 PPARAQ07869 468 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 NOGQ13253 232 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 PPIL2Q13356 520 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 SEPT2Q15019 361 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 RAB3GAP1Q15042 981 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CCL15Q16663 113 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 BMP2KLQ5H9B9 411 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 FAM47AQ5JRC9 791 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 KIAA1755Q5JYT7 1200 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 TREML2Q5T2D2 321 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 TMED8Q6PL24 325 aaPredicted RBP9.44□□□□□ -0.9
CCDC40-215ENST00000576033 TTC6Q86TZ1 520 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 ERO1BQ86YB8 467 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CERS3Q8IU89 383 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 FAM43AQ8N2R8 423 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CHMP4CQ96CF2 233 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 PICK1Q9NRD5 415 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 AFG3L2Q9Y4W6 797 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 ZHX2Q9Y6X8 837 aa9.44□□□□□ -0.9
CCDC40-215ENST00000576033 CASP8AP2Q9UKL3 1982 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 A0A1W2PRG0 241 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 NMT2O60551 498 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 CTNND1O60716 968 aaKnown RBP9.43□□□□□ -0.9
CCDC40-215ENST00000576033 TBC1D8O95759 1140 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 ZBTB48P10074 688 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-215ENST00000576033 GNAT2P19087 354 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 MTMR2Q13614 643 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 ABCB5Q2M3G0 1257 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 LRRFIP1Q32MZ4 808 aaKnown RBP9.43□□□□□ -0.9
CCDC40-215ENST00000576033 CERKLQ49MI3 558 aaPredicted RBP9.43□□□□□ -0.9
CCDC40-215ENST00000576033 SBK1Q52WX2 424 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 CCDC102AQ96A19 550 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 HOOK2Q96ED9 719 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 ESYT1Q9BSJ8 1104 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 WBP1LQ9NX94 342 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 RNF186Q9NXI6 227 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.43□□□□□ -0.9
CCDC40-215ENST00000576033 RLFQ13129 1914 aa9.43□□□□□ -0.9
CCDC40-215ENST00000576033 COL11A1P12107 1806 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-215ENST00000576033 A0A0G2JMZ2 1700 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 BTBD19C9JJ37 291 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 TRPA1O75762 1119 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 HSPA8P11142 646 aaKnown RBP9.42□□□□□ -0.9
CCDC40-215ENST00000576033 HMGCS2P54868 508 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 SPP2Q13103 211 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 GPAT2Q6NUI2 795 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 GADL1Q6ZQY3 521 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 SIAH1Q8IUQ4 282 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 FOXP4Q8IVH2 680 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-215ENST00000576033 LSG1Q9H089 658 aaKnown RBP9.42□□□□□ -0.9
CCDC40-215ENST00000576033 KCNH4Q9UQ05 1017 aa9.42□□□□□ -0.9
CCDC40-215ENST00000576033 ZMYM6O95789 1325 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 RAD50Q92878 1312 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 A0A0G2JLL6 359 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-215ENST00000576033 CYP2C8P10632 490 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 MAP2K2P36507 400 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 PPATQ06203 517 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 CRHR2Q13324 411 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 RRP12Q5JTH9 1297 aaKnown RBP9.41□□□□□ -0.9
CCDC40-215ENST00000576033 GIMAP6Q6P9H5 292 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 STOX1Q6ZVD7 989 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 PRRT2Q7Z6L0 340 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-215ENST00000576033 IFNL1Q8IU54 200 aa9.41□□□□□ -0.9
CCDC40-215ENST00000576033 LRRC47Q8N1G4 583 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms