RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 METTL16Q86W50 562 aaKnown RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 TRMT44Q8IYL2 757 aaKnown RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 ENAHQ8N8S7 591 aaPredicted RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 DPF2Q92785 391 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 NLRP3Q96P20 1036 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 SERTAD1Q9UHV2 236 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 ATRNO75882 1429 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 PPP6R2O75170 966 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 ZPR1O75312 459 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 DEXIO95424 95 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 AFMP43652 599 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 RPS8P62241 208 aaKnown RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 FANCCQ00597 558 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 CEP135Q66GS9 1140 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 STAMQ92783 540 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 SMARCC1Q92922 1105 aaPredicted RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 ABCA3Q99758 1704 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 SPATA31A5Q5VU36 1347 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 SPATA31A7Q8IWB4 1347 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 ITGB4P16144 1822 aa10.05□□□□□ -0.8
LINC00558-201ENST00000569422 MYO5AQ9Y4I1 1855 aaKnown RBP10.05□□□□□ -0.8
LINC00558-201ENST00000569422 CCDC196A0A1B0GTZ2 297 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 PRR29P0C7W0 189 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CDC25BP30305 580 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 PSEN1P49768 467 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 UBASH3AP57075 661 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 MECOMQ03112 1051 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 PTPN14Q15678 1187 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 EARS2Q5JPH6 523 aaKnown RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 RESP18Q5W5W9 173 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 KRBA2Q6ZNG9 492 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 ZNF384Q8TF68 577 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 ZSCAN10Q96SZ4 725 aaPredicted RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 RIOK1Q9BRS2 568 aaKnown RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 FANCLQ9NW38 375 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 BSDC1Q9NW68 430 aaPredicted RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 PNPLA7Q6ZV29 1317 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 SMTNL1A8MU46 457 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CUTAO60888 179 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 COBLO75128 1261 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 RBM6P78332 1123 aaKnown RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 NCAPHQ15003 741 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 ZNF174Q15697 407 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 KLHL10Q6JEL2 608 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CATIPQ7Z7H3 387 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 IQCA1Q86XH1 822 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CREBRFQ8IUR6 639 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 ANKIB1Q9P2G1 1089 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 THRAP3Q9Y2W1 955 aaKnown RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 SH3BP1Q9Y3L3 701 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 AKAP11Q9UKA4 1901 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 SFPQP23246 707 aaKnown RBP eCLIP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 IRX3P78415 501 aaPredicted RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CCZ1BP86790 482 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CCZ1P86791 482 aaPredicted RBP10.04□□□□□ -0.8
LINC00558-201ENST00000569422 PDE4BQ07343 736 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 UBE4AQ14139 1066 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CTR9Q6PD62 1173 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 AMIGO3Q86WK7 504 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CCDC112Q8NEF3 446 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 DHX58Q96C10 678 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 SPEF2Q9C093 1822 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 CSRNP2Q9H175 543 aa10.04□□□□□ -0.8
LINC00558-201ENST00000569422 SPDYE4A6NLX3 237 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 TMEM232C9JQI7 657 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 HIBADHP31937 336 aaKnown RBP10.03□□□□□ -0.8
LINC00558-201ENST00000569422 HPSEQ9Y251 543 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 TSPY2A6NKD2 308 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 VEGFAP15692 232 aaPredicted RBP10.03□□□□□ -0.8
LINC00558-201ENST00000569422 STX17P56962 302 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 ARMCX5Q6P1M9 558 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 SHISA4Q96DD7 197 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 EPSTI1Q96J88 318 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 TMX1Q9H3N1 280 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 MCM9Q9NXL9 1143 aa10.03□□□□□ -0.8
LINC00558-201ENST00000569422 NUP98P52948 1817 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 WNT7AO00755 349 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 BMP6P22004 513 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 MYL5Q02045 173 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 RILPL1Q5EBL4 403 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 PPP4R3BQ5MIZ7 849 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 CCDC125Q86Z20 511 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 COL4A1P02462 1669 aa10.02□□□□□ -0.8
LINC00558-201ENST00000569422 USP17L8P0C7I0 530 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 XBP1P17861 261 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 CBX1P83916 185 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 CLEC4GQ6UXB4 293 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 DZIP1Q86YF9 867 aaKnown RBP10.02□□□□□ -0.81
LINC00558-201ENST00000569422 NSUN4Q96CB9 384 aaKnown RBP10.02□□□□□ -0.81
LINC00558-201ENST00000569422 CCNL1Q9UK58 526 aaPredicted RBP10.02□□□□□ -0.81
LINC00558-201ENST00000569422 POSTNQ15063 836 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 SF3B3Q15393 1217 aaKnown RBP10.02□□□□□ -0.81
LINC00558-201ENST00000569422 SEC23AQ15436 765 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 HOMER1Q86YM7 354 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 DYNLL2Q96FJ2 89 aa10.02□□□□□ -0.81
LINC00558-201ENST00000569422 FBXO2Q9UK22 296 aaPredicted RBP10.02□□□□□ -0.81
LINC00558-201ENST00000569422 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 COL1A1P02452 1464 aaPredicted RBP10.01□□□□□ -0.81
LINC00558-201ENST00000569422 VWA3AA6NCI4 1184 aa10.01□□□□□ -0.81
LINC00558-201ENST00000569422 DIXDC1Q155Q3 683 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms