RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 USP5P45974 858 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 PLCD1P51178 756 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 HMGCS2P54868 508 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 MTMR2Q13614 643 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 SERPINB13Q9UIV8 391 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 PLXNB2O15031 1838 aa9.49□□□□□ -0.89
CDH3-209ENST00000569080 GREB1LQ9C091 1923 aaPredicted RBP9.48□□□□□ -0.89
CDH3-209ENST00000569080 A0A0G2JMZ2 1700 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 GNRH1P01148 92 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 OSBPP22059 807 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 SHMT1P34896 483 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 PSMC4P43686 418 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 BACE1P56817 501 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 TSHZ3Q63HK5 1081 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 CRACR2BQ8N4Y2 399 aaPredicted RBP9.48□□□□□ -0.89
CDH3-209ENST00000569080 SDR42E1Q8WUS8 393 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 DCP1AQ9NPI6 582 aaPredicted RBP9.48□□□□□ -0.89
CDH3-209ENST00000569080 ECHDC1Q9NTX5 307 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 GINM1Q9NU53 330 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 SRRDQ9UH36 339 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 SALL3Q9BXA9 1300 aa9.48□□□□□ -0.89
CDH3-209ENST00000569080 SMIM22K7EJ46 135 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 PRKAB2O43741 272 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 MBD4O95243 580 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 GH2P01242 217 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 CYP2D6P10635 497 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 GUCY1A2P33402 732 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 PRMT2P55345 433 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 PRKCZQ05513 592 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 KIF22Q14807 665 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 ARHGEF6Q15052 776 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 UBE3CQ15386 1083 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 FAM110CQ1W6H9 321 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 SLC9C1Q4G0N8 1177 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 POTEEQ6S8J3 1075 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 OTUD7AQ8TE49 926 aaPredicted RBP9.47□□□□□ -0.89
CDH3-209ENST00000569080 CRBNQ96SW2 442 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 CRNKL1Q9BZJ0 848 aaKnown RBP9.47□□□□□ -0.89
CDH3-209ENST00000569080 BCL11AQ9H165 835 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 ASCC2Q9H1I8 757 aaPredicted RBP9.47□□□□□ -0.89
CDH3-209ENST00000569080 ARMT1Q9H993 441 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 AS3MTQ9HBK9 375 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 DOCK3Q8IZD9 2030 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 PARP14Q460N5 1801 aa9.47□□□□□ -0.89
CDH3-209ENST00000569080 RLFQ13129 1914 aa9.46□□□□□ -0.89
CDH3-209ENST00000569080 ECM2O94769 699 aaPredicted RBP9.46□□□□□ -0.9
CDH3-209ENST00000569080 HOXA7P31268 230 aaPredicted RBP9.46□□□□□ -0.9
CDH3-209ENST00000569080 TTC6Q86TZ1 520 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 ANKRD13CQ8N6S4 541 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 KBTBD3Q8NAB2 608 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 SLC44A5Q8NCS7 719 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 PI4K2BQ8TCG2 481 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 SMCR8Q8TEV9 937 aaPredicted RBP9.46□□□□□ -0.9
CDH3-209ENST00000569080 SH3TC2Q8TF17 1288 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 C12orf42Q96LP6 360 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 YTHDC1Q96MU7 727 aaKnown RBP9.46□□□□□ -0.9
CDH3-209ENST00000569080 TRIM34Q9BYJ4 488 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.46□□□□□ -0.9
CDH3-209ENST00000569080 EMILIN3Q9NT22 766 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 PNMA3Q9UL41 463 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 GABRQQ9UN88 632 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 MYPNQ86TC9 1320 aa9.46□□□□□ -0.9
CDH3-209ENST00000569080 C19orf81C9J6K1 198 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 USP17L10C9JJH3 530 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 FMNL1O95466 1100 aaPredicted RBP9.45□□□□□ -0.9
CDH3-209ENST00000569080 FCGRTP55899 365 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 ACER1Q8TDN7 264 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 PUS7LQ9H0K6 701 aaKnown RBP9.45□□□□□ -0.9
CDH3-209ENST00000569080 MCM9Q9NXL9 1143 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 MORF4L1Q9UBU8 362 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 TTC41PQ6P2S7 1318 aa9.45□□□□□ -0.9
CDH3-209ENST00000569080 CYP2D7A0A087X1C5 515 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 PEX10O60683 326 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 POLR3DP05423 398 aaPredicted RBP9.44□□□□□ -0.9
CDH3-209ENST00000569080 GCLCP48506 637 aaPredicted RBP9.44□□□□□ -0.9
CDH3-209ENST00000569080 HERVK_113P62684 666 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 PABPC4Q13310 644 aaKnown RBP eCLIP9.44□□□□□ -0.9
CDH3-209ENST00000569080 HDAC1Q13547 482 aaPredicted RBP9.44□□□□□ -0.9
CDH3-209ENST00000569080 IRF5Q13568 498 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 ABCB5Q2M3G0 1257 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 CERKLQ49MI3 558 aaPredicted RBP9.44□□□□□ -0.9
CDH3-209ENST00000569080 OSBP2Q969R2 916 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 SHISA4Q96DD7 197 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 DYNLL2Q96FJ2 89 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 KIAA1683Q9H0B3 1180 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 TXNRD2Q9NNW7 524 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 ATP8A2Q9NTI2 1148 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 TAOK2Q9UL54 1235 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 ROBO3Q96MS0 1386 aa9.44□□□□□ -0.9
CDH3-209ENST00000569080 A0A1W2PRG0 241 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 TNPO2O14787 897 aaKnown RBP9.43□□□□□ -0.9
CDH3-209ENST00000569080 VCAM1P19320 739 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 EN2P19622 333 aaPredicted RBP9.43□□□□□ -0.9
CDH3-209ENST00000569080 HOXD10P28358 340 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 GRK4P32298 578 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 FLT3LGP49771 235 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 SEPT2Q15019 361 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 MTFR1Q15390 333 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 C12orf60Q5U649 245 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 USP17L2Q6R6M4 530 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms