RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 VPS37CA5D8V6 355 aaPredicted RBP22.2■■□□□ 1.15
CLN3-233ENST00000568452 F13A1P00488 732 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 CALM1P0DP23 149 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 CALM2P0DP24 149 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 CALM3P0DP25 149 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 TFAP4Q01664 338 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 CXCL9Q07325 125 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 CATIPQ7Z7H3 387 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 TCP11L1Q9NUJ3 509 aa22.2■■□□□ 1.15
CLN3-233ENST00000568452 TSPY3P0CV98 308 aa22.2■■□□□ 1.14
CLN3-233ENST00000568452 TSPY8P0CW00 308 aa22.2■■□□□ 1.14
CLN3-233ENST00000568452 RAB11FIP4Q86YS3 637 aa22.2■■□□□ 1.14
CLN3-233ENST00000568452 DHX36Q9H2U1 1008 aaKnown RBP22.2■■□□□ 1.14
CLN3-233ENST00000568452 SWAP70Q9UH65 585 aa22.2■■□□□ 1.14
CLN3-233ENST00000568452 RASA1P20936 1047 aa22.19■■□□□ 1.14
CLN3-233ENST00000568452 RTN1Q16799 776 aa22.19■■□□□ 1.14
CLN3-233ENST00000568452 DGKHQ86XP1 1220 aa22.19■■□□□ 1.14
CLN3-233ENST00000568452 TMOD2Q9NZR1 351 aa22.19■■□□□ 1.14
CLN3-233ENST00000568452 H3BQV1 296 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 DTNBO60941 627 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 DDAH1O94760 285 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 DLGAP5Q15398 846 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 IFFO2Q5TF58 517 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 SLC44A5Q8NCS7 719 aa22.18■■□□□ 1.14
CLN3-233ENST00000568452 ENTPD3O75355 529 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 RXRAP19793 462 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 ADD1P35611 737 aaKnown RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 GABPAQ06546 454 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 NFIAQ12857 509 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 ANKS1AQ92625 1134 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 MYL10Q9BUA6 226 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 EHD4Q9H223 541 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 ORC3Q9UBD5 711 aaPredicted RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 SERPINB13Q9UIV8 391 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 PCDHAC2Q9Y5I4 1007 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 SRCAPQ6ZRS2 3230 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 SPDYE2BA6NHP3 402 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 SPDYE6P0CI01 402 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 RPS12P25398 132 aaKnown RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 CDC27P30260 824 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 FANCBQ8NB91 859 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 MTMR14Q8NCE2 650 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 RGS22Q8NE09 1264 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 NEDD1Q8NHV4 660 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 NUP133Q8WUM0 1156 aa22.17■■□□□ 1.14
CLN3-233ENST00000568452 PRMT6Q96LA8 375 aaPredicted RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 TDRD3Q9H7E2 651 aaKnown RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 ZBTB12Q9Y330 459 aaPredicted RBP22.17■■□□□ 1.14
CLN3-233ENST00000568452 RASSF7Q02833 373 aa22.16■■□□□ 1.14
CLN3-233ENST00000568452 MCTP1Q6DN14 999 aa22.16■■□□□ 1.14
CLN3-233ENST00000568452 CCDC144CPQ8IYA2 1237 aa22.16■■□□□ 1.14
CLN3-233ENST00000568452 FAM217BQ9NTX9 383 aaPredicted RBP22.16■■□□□ 1.14
CLN3-233ENST00000568452 RBM28Q9NW13 759 aaKnown RBP22.16■■□□□ 1.14
CLN3-233ENST00000568452 FAM198AQ9UFP1 575 aa22.16■■□□□ 1.14
CLN3-233ENST00000568452 STK36Q9NRP7 1315 aa22.15■■□□□ 1.14
CLN3-233ENST00000568452 COL2A1P02458 1487 aaPredicted RBP22.15■■□□□ 1.14
CLN3-233ENST00000568452 FDPSP14324 419 aaKnown RBP22.15■■□□□ 1.14
CLN3-233ENST00000568452 IFNAR1P17181 557 aa22.15■■□□□ 1.14
CLN3-233ENST00000568452 EIF6P56537 245 aaKnown RBP22.15■■□□□ 1.14
CLN3-233ENST00000568452 CDC37L1Q7L3B6 337 aa22.15■■□□□ 1.14
CLN3-233ENST00000568452 KAT14Q9H8E8 782 aa22.15■■□□□ 1.14
CLN3-233ENST00000568452 NMT2O60551 498 aa22.14■■□□□ 1.14
CLN3-233ENST00000568452 NTRK3Q16288 839 aa22.14■■□□□ 1.14
CLN3-233ENST00000568452 RCSD1Q6JBY9 416 aa22.14■■□□□ 1.14
CLN3-233ENST00000568452 CACNB3P54284 484 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 SSRP1Q08945 709 aaKnown RBP22.13■■□□□ 1.13
CLN3-233ENST00000568452 IL17RBQ9NRM6 502 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 PI4KBQ9UBF8 816 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 PLIN4Q96Q06 1357 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 FZD9O00144 591 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 TCP10Q12799 353 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 TROAPQ12815 778 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 SKOR2Q2VWA4 1001 aaPredicted RBP22.13■■□□□ 1.13
CLN3-233ENST00000568452 ZSCAN29Q8IWY8 852 aaPredicted RBP22.13■■□□□ 1.13
CLN3-233ENST00000568452 TRIM22Q8IYM9 498 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 WASF1Q92558 559 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 MAP3K14Q99558 947 aa22.13■■□□□ 1.13
CLN3-233ENST00000568452 ZSCAN16Q9H4T2 348 aaPredicted RBP22.13■■□□□ 1.13
CLN3-233ENST00000568452 MYO1BO43795 1136 aa22.12■■□□□ 1.13
CLN3-233ENST00000568452 FMNL1O95466 1100 aaPredicted RBP22.12■■□□□ 1.13
CLN3-233ENST00000568452 FKBP1CQ5VVH2 108 aa22.12■■□□□ 1.13
CLN3-233ENST00000568452 FOXP4Q8IVH2 680 aaPredicted RBP22.12■■□□□ 1.13
CLN3-233ENST00000568452 CRACR2BQ8N4Y2 399 aaPredicted RBP22.12■■□□□ 1.13
CLN3-233ENST00000568452 CTCFLQ8NI51 663 aaPredicted RBP22.12■■□□□ 1.13
CLN3-233ENST00000568452 C8orf76Q96K31 380 aa22.12■■□□□ 1.13
CLN3-233ENST00000568452 CCDC17Q96LX7 622 aa22.12■■□□□ 1.13
CLN3-233ENST00000568452 ZNF70Q9UC06 446 aaPredicted RBP22.12■■□□□ 1.13
CLN3-233ENST00000568452 ATRNL1Q5VV63 1379 aa22.12■■□□□ 1.13
CLN3-233ENST00000568452 KIF5BP33176 963 aa22.11■■□□□ 1.13
CLN3-233ENST00000568452 SPDYE2Q495Y8 402 aa22.11■■□□□ 1.13
CLN3-233ENST00000568452 ZFPM1Q8IX07 1006 aa22.11■■□□□ 1.13
CLN3-233ENST00000568452 TRIM34Q9BYJ4 488 aa22.11■■□□□ 1.13
CLN3-233ENST00000568452 PPP4R3BQ5MIZ7 849 aa22.1■■□□□ 1.13
CLN3-233ENST00000568452 PNMA1Q8ND90 353 aa22.1■■□□□ 1.13
CLN3-233ENST00000568452 DPF2Q92785 391 aa22.1■■□□□ 1.13
CLN3-233ENST00000568452 SLC26A6Q9BXS9 759 aa22.1■■□□□ 1.13
CLN3-233ENST00000568452 DCAF8L1A6NGE4 600 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 PPFIA3O75145 1194 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 SHMT1P34896 483 aa22.09■■□□□ 1.13
CLN3-233ENST00000568452 ZNF280AP59817 542 aaPredicted RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms