RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 TRIM75PA6NK02 468 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 USP14P54578 494 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 IRF5Q13568 498 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 AMOTL1Q8IY63 956 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 C12orf42Q96LP6 360 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 CABP5Q9NP86 173 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 TMOD4Q9NZQ9 345 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 SRRDQ9UH36 339 aa13.51□□□□□ -0.25
CDH3-206ENST00000567674 PSMC4P43686 418 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 DYNLL1P63167 89 aaKnown RBP13.5□□□□□ -0.25
CDH3-206ENST00000567674 GABPAQ06546 454 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 HDAC1Q13547 482 aaPredicted RBP13.5□□□□□ -0.25
CDH3-206ENST00000567674 CERKLQ49MI3 558 aaPredicted RBP13.5□□□□□ -0.25
CDH3-206ENST00000567674 SLC9C1Q4G0N8 1177 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 MIGA1Q8NAN2 632 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 PXYLP1Q8TE99 480 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 SMCR8Q8TEV9 937 aaPredicted RBP13.5□□□□□ -0.25
CDH3-206ENST00000567674 ZNF333Q96JL9 665 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 CCDC17Q96LX7 622 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 DNAJC2Q99543 621 aaKnown RBP13.5□□□□□ -0.25
CDH3-206ENST00000567674 TMEM106CQ9BVX2 250 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 BOLA2Q9H3K6 86 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 DNAJC18Q9H819 358 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 ZBTB21Q9ULJ3 1066 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 PHIPQ8WWQ0 1821 aa13.5□□□□□ -0.25
CDH3-206ENST00000567674 H0YGN5 161 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 POLR3DP05423 398 aaPredicted RBP13.49□□□□□ -0.25
CDH3-206ENST00000567674 GNAT2P19087 354 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 MNX1P50219 401 aaPredicted RBP13.49□□□□□ -0.25
CDH3-206ENST00000567674 USP17L2Q6R6M4 530 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 GADL1Q6ZQY3 521 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 KBTBD3Q8NAB2 608 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 NKX2-3Q8TAU0 364 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 KIAA1683Q9H0B3 1180 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 DCP1AQ9NPI6 582 aaPredicted RBP13.49□□□□□ -0.25
CDH3-206ENST00000567674 MORF4L1Q9UBU8 362 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 CPA4Q9UI42 421 aa13.49□□□□□ -0.25
CDH3-206ENST00000567674 APBB1O00213 710 aa13.48□□□□□ -0.25
CDH3-206ENST00000567674 GLRX3O76003 335 aaKnown RBP13.48□□□□□ -0.25
CDH3-206ENST00000567674 FMNL1O95466 1100 aaPredicted RBP13.48□□□□□ -0.25
CDH3-206ENST00000567674 RRP1BQ14684 758 aaKnown RBP13.48□□□□□ -0.25
CDH3-206ENST00000567674 SLAIN1Q8ND83 568 aa13.48□□□□□ -0.25
CDH3-206ENST00000567674 TRIM47Q96LD4 638 aa13.48□□□□□ -0.25
CDH3-206ENST00000567674 ZBTB47Q9UFB7 747 aaPredicted RBP13.48□□□□□ -0.25
CDH3-206ENST00000567674 CUL9Q8IWT3 2517 aa13.48□□□□□ -0.25
CDH3-206ENST00000567674 PTPRFP10586 1907 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 CDK5RAP2Q96SN8 1893 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 CYP2C8P10632 490 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 HMGCS2P54868 508 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 ABCB5Q2M3G0 1257 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 CHRDL2Q6WN34 429 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 LBX2Q6XYB7 198 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 COA7Q96BR5 231 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 ASCC2Q9H1I8 757 aaPredicted RBP13.47□□□□□ -0.25
CDH3-206ENST00000567674 MCM9Q9NXL9 1143 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 NDUFB9Q9Y6M9 179 aa13.47□□□□□ -0.25
CDH3-206ENST00000567674 MYO5AQ9Y4I1 1855 aaKnown RBP13.46□□□□□ -0.25
CDH3-206ENST00000567674 LOC285556D6RIA3 1793 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 FAM196BA6NMK8 535 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 GRK4P32298 578 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 SHMT1P34896 483 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 PLCD1P51178 756 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 UBXN2AP68543 259 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 IRX3P78415 501 aaPredicted RBP13.46□□□□□ -0.25
CDH3-206ENST00000567674 SBK1Q52WX2 424 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 TMEM179Q6ZVK1 233 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 TRMT44Q8IYL2 757 aaKnown RBP13.46□□□□□ -0.25
CDH3-206ENST00000567674 RAET1EQ8TD07 263 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 SH2D4AQ9H788 454 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 ZNF287Q9HBT7 754 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 ARPP21Q9UBL0 812 aaPredicted RBP13.46□□□□□ -0.25
CDH3-206ENST00000567674 SAP30BPQ9UHR5 308 aaKnown RBP13.46□□□□□ -0.25
CDH3-206ENST00000567674 PCDHB15Q9Y5E8 787 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 PTCH2Q9Y6C5 1203 aa13.46□□□□□ -0.25
CDH3-206ENST00000567674 SIPA1L1O43166 1804 aa13.46□□□□□ -0.26
CDH3-206ENST00000567674 MYPNQ86TC9 1320 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 MYH1P12882 1939 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L15C9J2P7 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L13C9JLJ4 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L11C9JVI0 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L18D6R9N7 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L22D6RA61 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L17D6RBQ6 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L19D6RCP7 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L20D6RJB6 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 GH2P01242 217 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 USP17L24Q0WX57 530 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 MTMR2Q13614 643 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 TREML2Q5T2D2 321 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 C12orf60Q5U649 245 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 APPBP2Q92624 585 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 LPAR1Q92633 364 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 RBM27Q9P2N5 1060 aaKnown RBP13.45□□□□□ -0.26
CDH3-206ENST00000567674 SYNPO2Q9UMS6 1093 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 A0A0C4DFX4 3053 aa13.45□□□□□ -0.26
CDH3-206ENST00000567674 ATAD5Q96QE3 1844 aa13.44□□□□□ -0.26
CDH3-206ENST00000567674 TNPO2O14787 897 aaKnown RBP13.44□□□□□ -0.26
CDH3-206ENST00000567674 RNF113AO15541 343 aaKnown RBP13.44□□□□□ -0.26
CDH3-206ENST00000567674 MBD4O95243 580 aa13.44□□□□□ -0.26
CDH3-206ENST00000567674 XRCC5P13010 732 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms