RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 ZNF532Q9HCE3 1301 aa22.58■■□□□ 1.21
SMPD3-209ENST00000567223 HOXA7P31268 230 aaPredicted RBP22.58■■□□□ 1.21
SMPD3-209ENST00000567223 GCLCP48506 637 aaPredicted RBP22.58■■□□□ 1.21
SMPD3-209ENST00000567223 HMGCS2P54868 508 aa22.58■■□□□ 1.21
SMPD3-209ENST00000567223 CRNKL1Q9BZJ0 848 aaKnown RBP22.58■■□□□ 1.21
SMPD3-209ENST00000567223 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.58■■□□□ 1.21
SMPD3-209ENST00000567223 SAP30BPQ9UHR5 308 aaKnown RBP22.58■■□□□ 1.21
SMPD3-209ENST00000567223 MGAMO43451 1857 aa22.58■■□□□ 1.2
SMPD3-209ENST00000567223 ADD2P35612 726 aa22.57■■□□□ 1.2
SMPD3-209ENST00000567223 JAG1P78504 1218 aa22.57■■□□□ 1.2
SMPD3-209ENST00000567223 NAV1Q8NEY1 1877 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 USP17L10C9JJH3 530 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 FMNL1O95466 1100 aaPredicted RBP22.56■■□□□ 1.2
SMPD3-209ENST00000567223 GABPAQ06546 454 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 UBE3CQ15386 1083 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 BOLA2Q9H3K6 86 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 MYPNQ86TC9 1320 aa22.56■■□□□ 1.2
SMPD3-209ENST00000567223 POTEFA5A3E0 1075 aa22.55■■□□□ 1.2
SMPD3-209ENST00000567223 MTMR2Q13614 643 aa22.55■■□□□ 1.2
SMPD3-209ENST00000567223 TMEM106CQ9BVX2 250 aa22.55■■□□□ 1.2
SMPD3-209ENST00000567223 ECHDC1Q9NTX5 307 aa22.55■■□□□ 1.2
SMPD3-209ENST00000567223 IRF5Q13568 498 aa22.54■■□□□ 1.2
SMPD3-209ENST00000567223 C12orf42Q96LP6 360 aa22.54■■□□□ 1.2
SMPD3-209ENST00000567223 ASCC2Q9H1I8 757 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-209ENST00000567223 DCP1AQ9NPI6 582 aaPredicted RBP22.54■■□□□ 1.2
SMPD3-209ENST00000567223 ATP8A2Q9NTI2 1148 aa22.54■■□□□ 1.2
SMPD3-209ENST00000567223 TMOD4Q9NZQ9 345 aa22.54■■□□□ 1.2
SMPD3-209ENST00000567223 MORF4L1Q9UBU8 362 aa22.54■■□□□ 1.2
SMPD3-209ENST00000567223 GDF11O95390 407 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 GRK4P32298 578 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 PLCD1P51178 756 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 RRP1P56182 461 aaKnown RBP22.53■■□□□ 1.2
SMPD3-209ENST00000567223 ZSCAN25Q6NSZ9 544 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 LCORLQ8N3X6 602 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 EDC3Q96F86 508 aaKnown RBP22.53■■□□□ 1.2
SMPD3-209ENST00000567223 MYH7P12883 1935 aa22.53■■□□□ 1.2
SMPD3-209ENST00000567223 GH2P01242 217 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 SHMT1P34896 483 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 PRKCZQ05513 592 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 CERKLQ49MI3 558 aaPredicted RBP22.52■■□□□ 1.2
SMPD3-209ENST00000567223 ANKRD13CQ8N6S4 541 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 SLAIN1Q8ND83 568 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 RAET1EQ8TD07 263 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 PXYLP1Q8TE99 480 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 GTF3C2Q8WUA4 911 aaPredicted RBP22.52■■□□□ 1.2
SMPD3-209ENST00000567223 PDE4DIPQ5VU43 2346 aa22.52■■□□□ 1.2
SMPD3-209ENST00000567223 SH3TC2Q8TF17 1288 aa22.51■■□□□ 1.19
SMPD3-209ENST00000567223 GPATCH3Q96I76 525 aa22.51■■□□□ 1.19
SMPD3-209ENST00000567223 KIAA1683Q9H0B3 1180 aa22.51■■□□□ 1.19
SMPD3-209ENST00000567223 MCM9Q9NXL9 1143 aa22.51■■□□□ 1.19
SMPD3-209ENST00000567223 TNPO2O14787 897 aaKnown RBP22.5■■□□□ 1.19
SMPD3-209ENST00000567223 POLR3DP05423 398 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-209ENST00000567223 CAPN2P17655 700 aa22.5■■□□□ 1.19
SMPD3-209ENST00000567223 USP14P54578 494 aa22.5■■□□□ 1.19
SMPD3-209ENST00000567223 ABCB5Q2M3G0 1257 aa22.5■■□□□ 1.19
SMPD3-209ENST00000567223 SHROOM1Q2M3G4 852 aaPredicted RBP22.5■■□□□ 1.19
SMPD3-209ENST00000567223 PRPF38BQ5VTL8 546 aaKnown RBP22.5■■□□□ 1.19
SMPD3-209ENST00000567223 USP17L2Q6R6M4 530 aa22.5■■□□□ 1.19
SMPD3-209ENST00000567223 SWAP70Q9UH65 585 aa22.5■■□□□ 1.19
SMPD3-209ENST00000567223 KIAA0100Q14667 2235 aaKnown RBP22.5■■□□□ 1.19
SMPD3-209ENST00000567223 SMARCA5O60264 1052 aaPredicted RBP22.49■■□□□ 1.19
SMPD3-209ENST00000567223 SDR42E1Q8WUS8 393 aa22.49■■□□□ 1.19
SMPD3-209ENST00000567223 CABP5Q9NP86 173 aa22.49■■□□□ 1.19
SMPD3-209ENST00000567223 EMILIN3Q9NT22 766 aa22.49■■□□□ 1.19
SMPD3-209ENST00000567223 PCDHB15Q9Y5E8 787 aa22.49■■□□□ 1.19
SMPD3-209ENST00000567223 TTC41PQ6P2S7 1318 aa22.49■■□□□ 1.19
SMPD3-209ENST00000567223 MBD4O95243 580 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 EN2P19622 333 aaPredicted RBP22.48■■□□□ 1.19
SMPD3-209ENST00000567223 FLT3LGP49771 235 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 IRX3P78415 501 aaPredicted RBP22.48■■□□□ 1.19
SMPD3-209ENST00000567223 AAMPQ13685 434 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 SLC4A8Q2Y0W8 1093 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 KBTBD3Q8NAB2 608 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 COA7Q96BR5 231 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 ARMT1Q9H993 441 aa22.48■■□□□ 1.19
SMPD3-209ENST00000567223 GUCY1A2P33402 732 aa22.47■■□□□ 1.19
SMPD3-209ENST00000567223 HERVK_113P62684 666 aa22.47■■□□□ 1.19
SMPD3-209ENST00000567223 UBXN2AP68543 259 aa22.47■■□□□ 1.19
SMPD3-209ENST00000567223 NKX2-3Q8TAU0 364 aa22.47■■□□□ 1.19
SMPD3-209ENST00000567223 GABRQQ9UN88 632 aa22.47■■□□□ 1.19
SMPD3-209ENST00000567223 LBX2Q6XYB7 198 aa22.46■■□□□ 1.19
SMPD3-209ENST00000567223 GJB1P08034 283 aa22.45■■□□□ 1.18
SMPD3-209ENST00000567223 ZFYP08048 801 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-209ENST00000567223 C12orf60Q5U649 245 aa22.45■■□□□ 1.18
SMPD3-209ENST00000567223 GIMAP6Q6P9H5 292 aa22.45■■□□□ 1.18
SMPD3-209ENST00000567223 DDRGK1Q96HY6 314 aa22.45■■□□□ 1.18
SMPD3-209ENST00000567223 P2RX7Q99572 595 aaKnown RBP22.45■■□□□ 1.18
SMPD3-209ENST00000567223 ADCY3O60266 1144 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 GJA8P48165 433 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 RAB3GAP1Q15042 981 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 TMEM179Q6ZVK1 233 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 AMOTL1Q8IY63 956 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 GPRC5AQ8NFJ5 357 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 CCDC17Q96LX7 622 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 PUS7LQ9H0K6 701 aaKnown RBP22.44■■□□□ 1.18
SMPD3-209ENST00000567223 GJD2Q9UKL4 321 aa22.44■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L15C9J2P7 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L13C9JLJ4 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L11C9JVI0 530 aa22.43■■□□□ 1.18
SMPD3-209ENST00000567223 USP17L18D6R9N7 530 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms