RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 EVX2Q03828 476 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 KIF22Q14807 665 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 SLC4A8Q2Y0W8 1093 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 LCORLQ8N3X6 602 aa18.04■□□□□ 0.48
CLN3-213ENST00000565047 SHMT1P34896 483 aa18.03■□□□□ 0.48
CLN3-213ENST00000565047 RRP1P56182 461 aaKnown RBP18.03■□□□□ 0.48
CLN3-213ENST00000565047 CRACR2BQ8N4Y2 399 aaPredicted RBP18.03■□□□□ 0.48
CLN3-213ENST00000565047 AS3MTQ9HBK9 375 aa18.03■□□□□ 0.48
CLN3-213ENST00000565047 SERPINB13Q9UIV8 391 aa18.03■□□□□ 0.48
CLN3-213ENST00000565047 HOXA7P31268 230 aaPredicted RBP18.02■□□□□ 0.48
CLN3-213ENST00000565047 MTMR2Q13614 643 aa18.02■□□□□ 0.48
CLN3-213ENST00000565047 SLC9C1Q4G0N8 1177 aa18.02■□□□□ 0.48
CLN3-213ENST00000565047 TTC6Q86TZ1 520 aa18.02■□□□□ 0.48
CLN3-213ENST00000565047 SH3TC2Q8TF17 1288 aa18.02■□□□□ 0.48
CLN3-213ENST00000565047 DCP1AQ9NPI6 582 aaPredicted RBP18.02■□□□□ 0.48
CLN3-213ENST00000565047 C19orf81C9J6K1 198 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 ECM2O94769 699 aaPredicted RBP18.01■□□□□ 0.47
CLN3-213ENST00000565047 FMNL1O95466 1100 aaPredicted RBP18.01■□□□□ 0.47
CLN3-213ENST00000565047 GH2P01242 217 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 GUCY1A2P33402 732 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 UBE3CQ15386 1083 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 POTEEQ6S8J3 1075 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 SDR42E1Q8WUS8 393 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 BCL11AQ9H165 835 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 ASCC2Q9H1I8 757 aaPredicted RBP18.01■□□□□ 0.47
CLN3-213ENST00000565047 EMILIN3Q9NT22 766 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 ECHDC1Q9NTX5 307 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 GABRQQ9UN88 632 aa18.01■□□□□ 0.47
CLN3-213ENST00000565047 USP17L10C9JJH3 530 aa18■□□□□ 0.47
CLN3-213ENST00000565047 PRKAB2O43741 272 aa18■□□□□ 0.47
CLN3-213ENST00000565047 EN2P19622 333 aaPredicted RBP18■□□□□ 0.47
CLN3-213ENST00000565047 FCGRTP55899 365 aa18■□□□□ 0.47
CLN3-213ENST00000565047 PRKCZQ05513 592 aa18■□□□□ 0.47
CLN3-213ENST00000565047 FAM110CQ1W6H9 321 aa18■□□□□ 0.47
CLN3-213ENST00000565047 NBPF11Q86T75 865 aa18■□□□□ 0.47
CLN3-213ENST00000565047 ANKRD13CQ8N6S4 541 aa18■□□□□ 0.47
CLN3-213ENST00000565047 CRNKL1Q9BZJ0 848 aaKnown RBP18■□□□□ 0.47
CLN3-213ENST00000565047 ARMT1Q9H993 441 aa18■□□□□ 0.47
CLN3-213ENST00000565047 PNMA3Q9UL41 463 aa18■□□□□ 0.47
CLN3-213ENST00000565047 MGAMO43451 1857 aa18■□□□□ 0.47
CLN3-213ENST00000565047 MYPNQ86TC9 1320 aa17.99■□□□□ 0.47
CLN3-213ENST00000565047 HOXD10P28358 340 aa17.99■□□□□ 0.47
CLN3-213ENST00000565047 CERKLQ49MI3 558 aaPredicted RBP17.99■□□□□ 0.47
CLN3-213ENST00000565047 SMCR8Q8TEV9 937 aaPredicted RBP17.99■□□□□ 0.47
CLN3-213ENST00000565047 C12orf42Q96LP6 360 aa17.99■□□□□ 0.47
CLN3-213ENST00000565047 TRIM34Q9BYJ4 488 aa17.99■□□□□ 0.47
CLN3-213ENST00000565047 MCM9Q9NXL9 1143 aa17.99■□□□□ 0.47
CLN3-213ENST00000565047 KIAA0100Q14667 2235 aaKnown RBP17.98■□□□□ 0.47
CLN3-213ENST00000565047 SMIM22K7EJ46 135 aa17.98■□□□□ 0.47
CLN3-213ENST00000565047 MBD4O95243 580 aa17.98■□□□□ 0.47
CLN3-213ENST00000565047 CYP2D6P10635 497 aa17.98■□□□□ 0.47
CLN3-213ENST00000565047 GCLCP48506 637 aaPredicted RBP17.98■□□□□ 0.47
CLN3-213ENST00000565047 PABPC4Q13310 644 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLN3-213ENST00000565047 P2RX7Q99572 595 aaKnown RBP17.98■□□□□ 0.47
CLN3-213ENST00000565047 PUS7LQ9H0K6 701 aaKnown RBP17.98■□□□□ 0.47
CLN3-213ENST00000565047 MORF4L1Q9UBU8 362 aa17.98■□□□□ 0.47
CLN3-213ENST00000565047 NAV1Q8NEY1 1877 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 GRK4P32298 578 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 IRF5Q13568 498 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 MTFR1Q15390 333 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 TSHZ3Q63HK5 1081 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 CRBNQ96SW2 442 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.97■□□□□ 0.473e-6■■■■■ 42.3
CLN3-213ENST00000565047 TXNRD2Q9NNW7 524 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 ATP8A2Q9NTI2 1148 aa17.97■□□□□ 0.47
CLN3-213ENST00000565047 POLR3DP05423 398 aaPredicted RBP17.96■□□□□ 0.47
CLN3-213ENST00000565047 FLT3LGP49771 235 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 ABCB5Q2M3G0 1257 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 KBTBD3Q8NAB2 608 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 RAET1EQ8TD07 263 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 ACER1Q8TDN7 264 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 KIAA1683Q9H0B3 1180 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 TMOD4Q9NZQ9 345 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 RBPJLQ9UBG7 517 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 GJD2Q9UKL4 321 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 TAOK2Q9UL54 1235 aa17.96■□□□□ 0.47
CLN3-213ENST00000565047 SALL3Q9BXA9 1300 aa17.96■□□□□ 0.46
CLN3-213ENST00000565047 PEX10O60683 326 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 HERVK_113P62684 666 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 C12orf60Q5U649 245 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 USP17L2Q6R6M4 530 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 SIAH1Q8IUQ4 282 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 SLC44A5Q8NCS7 719 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 PI4K2BQ8TCG2 481 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 OTUD7AQ8TE49 926 aaPredicted RBP17.95■□□□□ 0.46
CLN3-213ENST00000565047 PXYLP1Q8TE99 480 aa17.95■□□□□ 0.46
CLN3-213ENST00000565047 STRBPQ96SI9 672 aaKnown RBP17.95■□□□□ 0.46
CLN3-213ENST00000565047 MYH7P12883 1935 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 A0A1W2PRG0 241 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 SEPT2Q15019 361 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 Q3C1V9 767 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 ZSCAN25Q6NSZ9 544 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 OSBP2Q969R2 916 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 DYNLL2Q96FJ2 89 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 TMEM106CQ9BVX2 250 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 PDE4DIPQ5VU43 2346 aa17.94■□□□□ 0.46
CLN3-213ENST00000565047 DOCK3Q8IZD9 2030 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 CYP2D7A0A087X1C5 515 aa17.93■□□□□ 0.46
CLN3-213ENST00000565047 TNPO2O14787 897 aaKnown RBP17.93■□□□□ 0.46
CLN3-213ENST00000565047 RAB3GAP1Q15042 981 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms