RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 SMCR8Q8TEV9 937 aaPredicted RBP13.15□□□□□ -0.3
VPS39-208ENST00000564994 BOLA2Q9H3K6 86 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 AS3MTQ9HBK9 375 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 ZBTB21Q9ULJ3 1066 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 GABRQQ9UN88 632 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 MYPNQ86TC9 1320 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 ZNF532Q9HCE3 1301 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 MAGEB6P1A0A0J9YX57 407 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 CHGBP05060 677 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 ATP5JP18859 108 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 PLCD1P51178 756 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 FCGRTP55899 365 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 BACE1P56817 501 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 EVX2Q03828 476 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 PRKCZQ05513 592 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 MTMR2Q13614 643 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 TATDN1Q6P1N9 297 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 ANKRD13CQ8N6S4 541 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 TRIM34Q9BYJ4 488 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 PAG1Q9NWQ8 432 aa13.14□□□□□ -0.31
VPS39-208ENST00000564994 MYH8P13535 1937 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 HOXD10P28358 340 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 LCORLQ8N3X6 602 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 RAET1EQ8TD07 263 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 HAUS7Q99871 368 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 LRRCC1Q9C099 1032 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 ASCC2Q9H1I8 757 aaPredicted RBP13.13□□□□□ -0.31
VPS39-208ENST00000564994 EHD4Q9H223 541 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 GINM1Q9NU53 330 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 SERPINB13Q9UIV8 391 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 PNMA3Q9UL41 463 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 PLXNB2O15031 1838 aa13.13□□□□□ -0.31
VPS39-208ENST00000564994 USP17L10C9JJH3 530 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 GH2P01242 217 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 ADD2P35612 726 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 MTFR1Q15390 333 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 FAM110CQ1W6H9 321 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 TTC6Q86TZ1 520 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 SDR42E1Q8WUS8 393 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 CEP290O15078 2479 aa13.12□□□□□ -0.31
VPS39-208ENST00000564994 C19orf81C9J6K1 198 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 PEX10O60683 326 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 GRK4P32298 578 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 SHMT1P34896 483 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 FLT3LGP49771 235 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 GABPAQ06546 454 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 PABPC4Q13310 644 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS39-208ENST00000564994 CRNKL1Q9BZJ0 848 aaKnown RBP13.11□□□□□ -0.31
VPS39-208ENST00000564994 DCTPP1Q9H773 170 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 ARMT1Q9H993 441 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 DCP1AQ9NPI6 582 aaPredicted RBP13.11□□□□□ -0.31
VPS39-208ENST00000564994 EMILIN3Q9NT22 766 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 TMOD4Q9NZQ9 345 aa13.11□□□□□ -0.31
VPS39-208ENST00000564994 TNPO2O14787 897 aaKnown RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 PRKAB2O43741 272 aa13.1□□□□□ -0.31
VPS39-208ENST00000564994 POLR3DP05423 398 aaPredicted RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 CYP2D6P10635 497 aa13.1□□□□□ -0.31
VPS39-208ENST00000564994 HOXA7P31268 230 aaPredicted RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 GCLCP48506 637 aaPredicted RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 CERKLQ49MI3 558 aaPredicted RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 PRPF38BQ5VTL8 546 aaKnown RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 P2RX7Q99572 595 aaKnown RBP13.1□□□□□ -0.31
VPS39-208ENST00000564994 MCM9Q9NXL9 1143 aa13.1□□□□□ -0.31
VPS39-208ENST00000564994 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
VPS39-208ENST00000564994 MBD4O95243 580 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 ELNP15502 786 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 GUCY1A2P33402 732 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 IRF5Q13568 498 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 ABCB5Q2M3G0 1257 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 POTEEQ6S8J3 1075 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 ACER1Q8TDN7 264 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 SHISA4Q96DD7 197 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 TXNRD2Q9NNW7 524 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 MORF4L1Q9UBU8 362 aa13.09□□□□□ -0.31
VPS39-208ENST00000564994 SMIM22K7EJ46 135 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 ADCY3O60266 1144 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 CCL5P13501 91 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 RRP1P56182 461 aaKnown RBP13.08□□□□□ -0.32
VPS39-208ENST00000564994 HERVK_113P62684 666 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 IRX3P78415 501 aaPredicted RBP13.08□□□□□ -0.32
VPS39-208ENST00000564994 RAB3GAP1Q15042 981 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 UBE3CQ15386 1083 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 ZYXQ15942 572 aaKnown RBP13.08□□□□□ -0.32
VPS39-208ENST00000564994 TSHZ3Q63HK5 1081 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 USP17L2Q6R6M4 530 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 SLC44A5Q8NCS7 719 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 SLAIN1Q8ND83 568 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 C12orf42Q96LP6 360 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS39-208ENST00000564994 ECHDC1Q9NTX5 307 aa13.08□□□□□ -0.32
VPS39-208ENST00000564994 SEPT2Q15019 361 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 PXYLP1Q8TE99 480 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 COA7Q96BR5 231 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 DYNLL2Q96FJ2 89 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 PUS7LQ9H0K6 701 aaKnown RBP13.07□□□□□ -0.32
VPS39-208ENST00000564994 RBPJLQ9UBG7 517 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 BIN2Q9UBW5 565 aaPredicted RBP13.07□□□□□ -0.32
VPS39-208ENST00000564994 GJD2Q9UKL4 321 aa13.07□□□□□ -0.32
VPS39-208ENST00000564994 RLFQ13129 1914 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms