RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CRNKL1Q9BZJ0 848 aaKnown RBP10.5□□□□□ -0.73
VPS39-207ENST00000563692 KRT23Q9C075 422 aa10.5□□□□□ -0.73
VPS39-207ENST00000563692 ZNF646O15015 1829 aaPredicted RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 MANSC4A6NHS7 340 aaPredicted RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 PRC1O43663 620 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 DHX16O60231 1041 aaKnown RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 SLC3A2P08195 630 aaKnown RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 GRIK5Q16478 980 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 SPRYD7Q5W111 196 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 CLEC17AQ6ZS10 378 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 ANKRD13AQ8IZ07 590 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 BRF1Q92994 677 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 ABHD8Q96I13 439 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 TCEANC2Q96MN5 208 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 RIOK1Q9BRS2 568 aaKnown RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 LLPHQ9BRT6 129 aaKnown RBP10.49□□□□□ -0.73
VPS39-207ENST00000563692 AGXT2Q9BYV1 514 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 ATP8A2Q9NTI2 1148 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 KIF3AQ9Y496 699 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 ATP6V1DQ9Y5K8 247 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 CSADQ9Y600 493 aa10.49□□□□□ -0.73
VPS39-207ENST00000563692 PRKAB2O43741 272 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 PFKFB2O60825 505 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 ALDH1A1P00352 501 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 ZBTB48P10074 688 aaPredicted RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 PCP11498 1178 aaKnown RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 GJB2P29033 226 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 TM4SF4P48230 202 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 INHBEP58166 350 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 SART3Q15020 963 aaKnown RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 SKOR2Q2VWA4 1001 aaPredicted RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 AKNAD1Q5T1N1 836 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 FKBP1CQ5VVH2 108 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 DCAF15Q66K64 600 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 OTUD7BQ6GQQ9 843 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 APOBEC3HQ6NTF7 200 aaKnown RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 FAM83AQ86UY5 434 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 AMOTL1Q8IY63 956 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 MB21D2Q8IYB1 491 aaPredicted RBP10.48□□□□□ -0.73
VPS39-207ENST00000563692 NECAB1Q8N987 351 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 WNK4Q96J92 1243 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 TMEM87BQ96K49 555 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 MTA3Q9BTC8 594 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 TMEM39BQ9GZU3 492 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 FZD1Q9UP38 647 aa10.48□□□□□ -0.73
VPS39-207ENST00000563692 ERICH2A1L162 156 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 MINDY4BA8MYZ0 360 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 BAG4O95429 457 aaKnown RBP10.47□□□□□ -0.73
VPS39-207ENST00000563692 BRD1O95696 1058 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 PLCG2P16885 1265 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 PRDX5P30044 214 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 NT5C2P49902 561 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 CACNB3P54284 484 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 EVCP57679 992 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 PPP4CP60510 307 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 DYNLL1P63167 89 aaKnown RBP10.47□□□□□ -0.73
VPS39-207ENST00000563692 PPARAQ07869 468 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 STK3Q13188 491 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 DGKZQ13574 1117 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 SYNE3Q6ZMZ3 975 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 ADGRA1Q86SQ6 560 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 TMTC2Q8N394 836 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 STAG1Q8WVM7 1258 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 GTF3C6Q969F1 213 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 CLMNQ96JQ2 1002 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 LRRC2Q9BYS8 371 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 AATFQ9NY61 560 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS39-207ENST00000563692 ANAPC4Q9UJX5 808 aa10.47□□□□□ -0.73
VPS39-207ENST00000563692 NAP1L2Q9ULW6 460 aaPredicted RBP10.47□□□□□ -0.73
VPS39-207ENST00000563692 MYH7P12883 1935 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 CCDC85CA6NKD9 419 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 STX6O43752 255 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 USP2O75604 605 aaPredicted RBP10.46□□□□□ -0.73
VPS39-207ENST00000563692 LARGE1O95461 756 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 MAP3K9P80192 1104 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 HMGN5P82970 282 aaKnown RBP10.46□□□□□ -0.73
VPS39-207ENST00000563692 APOBRQ0VD83 1088 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 DIXDC1Q155Q3 683 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 LARP1BQ659C4 914 aaKnown RBP10.46□□□□□ -0.73
VPS39-207ENST00000563692 CHST3Q7LGC8 479 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 FAM184AQ8NB25 1140 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 SDR42E1Q8WUS8 393 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 FAM163AQ96GL9 167 aaPredicted RBP10.46□□□□□ -0.73
VPS39-207ENST00000563692 TEPSINQ96N21 525 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 MCOLN1Q9GZU1 580 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 EPB41L4AQ9HCS5 686 aaPredicted RBP10.46□□□□□ -0.73
VPS39-207ENST00000563692 TOMM22Q9NS69 142 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 USP40Q9NVE5 1235 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 DAGLAQ9Y4D2 1042 aa10.46□□□□□ -0.73
VPS39-207ENST00000563692 DOCK2Q92608 1830 aa10.46□□□□□ -0.74
VPS39-207ENST00000563692 SSC5DA1L4H1 1573 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 TBC1D8O95759 1140 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 ZSCAN22P10073 491 aaPredicted RBP10.45□□□□□ -0.74
VPS39-207ENST00000563692 SYT1P21579 422 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 PDIA3P30101 505 aaKnown RBP10.45□□□□□ -0.74
VPS39-207ENST00000563692 USP5P45974 858 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 CTDSPL2Q05D32 466 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 TCP10Q12799 353 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 SBK1Q52WX2 424 aa10.45□□□□□ -0.74
VPS39-207ENST00000563692 CPLX2Q6PUV4 134 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms